Gene detail information of Glyur000578s00021001 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G33330.1 | 2.00E-34 | plasmodesmata-located protein 3 |
| NR | XP_003535376.1 | 2.74E-128 | PREDICTED: cysteine-rich repeat secretory protein 3-like [Glycine max] |
| Swissprot | tr|O22784|CRR11_ARATH | 2.00E-40 | Cysteine-rich repeat secretory protein 11 (Precursor) |
| trEMBL | tr|K7LJU0|K7LJU0_SOYBN | 1.00E-128 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G30820.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00578 | 52134 | 53288 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000578s00021001.1 | PF01657.12 | Stress-antifung | 35 | 134 | 1.30E-15 |
| Glyur000578s00021001.1 | PF01657.12 | Stress-antifung | 178 | 234 | 2.70E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.214 |
| SRR1783600 | control | 5.121 |
| SRR1783602 | moderate drought stress | 4.092 |
| SRR1811619 | moderate drought stress | 3.975 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.066 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.069 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.086 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.113 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.112 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.450 |
| SRR2868004 | Drought Stress (root) | 4.889 |
| SRR2967015 | Control (root) | 4.826 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.064 |
| SRR9715741 | Leaf | 0.138 |
| SRR9715739 | Root | 1.812 |
| SRR9715742 | Root | 0.671 |
| SRR9715743 | Root | 0.972 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.037 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.268 |
| SRR8749031 | Uninduced | 0.263 |
| SRR8749032 | Uninduced | 0.029 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.600 |
| SRR8400027 | Control - Root | 15.219 |