Gene detail

Gene detail information of Glyur000578s00020999

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G04540.1	2.00E-56	Calcium-dependent lipid-binding (CaLB domain) family protein
NR	XP_004495587.1	3.51E-180	PREDICTED: uncharacterized protein LOC101488962 [Cicer arietinum]
trEMBL	tr\|G7I6T6\|G7I6T6_MEDTR	2.00E-180	Calcium-dependent lipid-binding (CaLB domain) family protein {ECO:0000313\|EMBL:AES61231.1}

Sequence

Transcript Sequence

>Glyur000578s00020999.1
ATGTCAATGCTGGCGCCCCCATTCCAGCTCTTAGAAATCAACATGATATCGGCGCAAGACCTAGCACCGGTATCCAAATCGATGAAAGCATACGCGGTGGCATGGCTGAACCCAGAACGCAAATTAACGACCCAAATAGACCCAGACGGTCACAACAACCCAACGTGGAACGAGAAATTCGTGTTCCGCGTCGACGACGACTTCCTCCAAGCCGAAGACTCCGTCATCATGATCGAGATCTACGCCTCCGCATGGCTCCGCGATGTTCTCATCGGAACCGTCGGCGTCCTCCTCACCAACCTCCTCCCTCGCTCCAACATTAACCACCGCAACAAATCCAACAAGGTCCGGTTCGTTGCGTTACAGGTTCGTCGTCCCTCCGGTCGACCACAGGGGATTCTCAACATTGGGGTTAACCTCGTCGACGCCACAATGAGAAGCATGCCCATGTATTCCGAGCTTAGTTCCTCTGCGGTTGAGTATTGGGACATAATGGACCCCAAAAAGGACCACAAGCCCAATCAAAATCACGAAAATGCCACTCCTCTCGACGCCACGAAGCTCATGACGCTTCAACGGTCGCAGAGCGAGAAAAACGATTCCTCAACCGTCAANGAGTACCCTGCATATAAACCTGGCGGGAAAAACGGTTACGGTAATGATCATGATCAATATCATTACCAAGGGGGTGATTCCGAGGTTGGGGTTCCGGTTGCGGCAAAGAAAGNTGGGATCGTGAACGCGAATGGTTCGCTCTGTTCTGACGTGGGACCTTCGCCGTCGGTGGTGGCGGCGGCGATAGCGAAGGGGTTGTATCCTTTGCCGATGCCGATGCCGCGAAAGGCGGTGAACTTGGTGTTGGAGGATTGGCCACCGGAGAAGGGGCCTATCGGTGCGGAGGGGCTGAATACGAAGATAGAGCGGTGGCGGTCGGGGGAGATGCCGGCGGTGTACGATCACCTTGGGCAGAATAACAATAACAGTAACAATGGGCAGAAGAAGGTGGTGAAGGCGACGGGGAAGGGTAAAGTGGGGAAGAACCAGAGACGGCCGGGTGGTGGGTTGTTTTCGTGTTTTGGGACGGCATTGGGGTGTGAGATATCGATAACTTGTGGAGGAGGGGGGAACCGTAAGAAGAAGTACGATGGTAATGGGAAGCCTCGTGTTACCACTGCATCTGAACTCACCTTTGATGAGTCCTCCTATGTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00578	49200	50411	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000578s00020999.1	PF00168.25	C2	11	94	2.50E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.181
SRR1783600	control	0.182
SRR1783602	moderate drought stress	0.207
SRR1811619	moderate drought stress	0.279

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.536
DRR006520	Root Summer glycyrrhizin high producing strain	0.797
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.230
DRR006524	Root Summer glycyrrhizin low producing strain	0.272
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.647
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.563

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.306
SRR2868004	Drought Stress (root)	7.213
SRR2967015	Control (root)	6.162

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.438
SRR9715740	Leaf	0.354
SRR9715741	Leaf	1.933
SRR9715739	Root	0.121
SRR9715742	Root	0.278
SRR9715743	Root	0.152

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.383
SRR8749028	MeJA induced 9h	1.635
SRR8749029	MeJA induced 9h	0.253
SRR8749030	Uninduced	3.072
SRR8749031	Uninduced	14.018
SRR8749032	Uninduced	6.462

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.242
SRR8400027	Control - Root	0.625