Gene detail information of Glyur000578s00020996 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G04340.1 | 0 | FtsH extracellular protease family |
| NR | XP_004495590.1 | 0 | PREDICTED: uncharacterized protein LOC101489933 [Cicer arietinum] |
| COG | YP_004281736.1 | 8.00E-48 | ATP-dependent metalloprotease FtsH [Desulfurobacterium thermolithotrophum DSM 11699] |
| Swissprot | tr|Q9FIM2|FTSH9_ARATH | 4.00E-40 | ATP-dependent zinc metalloprotease FTSH 9, chloroplastic (Precursor) |
| trEMBL | tr|G7I6U3|G7I6U3_MEDTR | 0 | FTSH extracellular protease family protein {ECO:0000313|EMBL:AES61238.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00578 | 2235 | 10876 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000578s00020996.1 | PF00004.24 | AAA | 741 | 873 | 4.10E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.267 |
| SRR1783600 | control | 7.343 |
| SRR1783602 | moderate drought stress | 8.030 |
| SRR1811619 | moderate drought stress | 8.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.324 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.253 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.707 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.592 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.975 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.873 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.480 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.218 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.686 |
| SRR2868004 | Drought Stress (root) | 8.107 |
| SRR2967015 | Control (root) | 8.859 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.172 |
| SRR9715740 | Leaf | 8.056 |
| SRR9715741 | Leaf | 6.127 |
| SRR9715739 | Root | 0.589 |
| SRR9715742 | Root | 6.691 |
| SRR9715743 | Root | 5.763 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.932 |
| SRR8749028 | MeJA induced 9h | 5.854 |
| SRR8749029 | MeJA induced 9h | 2.034 |
| SRR8749030 | Uninduced | 1.100 |
| SRR8749031 | Uninduced | 1.049 |
| SRR8749032 | Uninduced | 0.905 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.850 |
| SRR8400027 | Control - Root | 19.151 |