Gene detail information of Glyur000577s00027238 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G46330.1 | 1.00E-06 | arabinogalactan protein 16 |
| NR | XP_003538224.1 | 2.65E-28 | PREDICTED: arabinogalactan peptide 16 [Glycine max] |
| Swissprot | tr|O82337|AGP16_ARATH | 5.00E-16 | Arabinogalactan peptide 16 (Precursor) |
| trEMBL | tr|C6SV73|C6SV73_SOYBN | 1.00E-28 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G02130.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00577 | 129377 | 130162 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000577s00027238.1 | PF06376.7 | DUF1070 | 35 | 67 | 1.30E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 61.693 |
| SRR1783600 | control | 62.038 |
| SRR1783602 | moderate drought stress | 73.917 |
| SRR1811619 | moderate drought stress | 73.647 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 59.097 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 59.542 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.605 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.429 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 36.796 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 35.428 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.889 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.027 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 49.340 |
| SRR2868004 | Drought Stress (root) | 35.527 |
| SRR2967015 | Control (root) | 41.604 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.838 |
| SRR9715740 | Leaf | 1.768 |
| SRR9715741 | Leaf | 1.942 |
| SRR9715739 | Root | 201.654 |
| SRR9715742 | Root | 71.410 |
| SRR9715743 | Root | 91.263 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 65.452 |
| SRR8749028 | MeJA induced 9h | 20.005 |
| SRR8749029 | MeJA induced 9h | 34.084 |
| SRR8749030 | Uninduced | 10.915 |
| SRR8749031 | Uninduced | 6.641 |
| SRR8749032 | Uninduced | 38.062 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 92.493 |
| SRR8400027 | Control - Root | 88.399 |