Gene detail

Gene detail information of Glyur000577s00027226

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G11070.1	3.00E-23	WRKY family transcription factor
NR	XP_003525349.1	1.56E-100	PREDICTED: probable WRKY transcription factor 53-like [Glycine max]
Swissprot	tr\|Q8H0Y8\|WRK41_ARATH	6.00E-26	Probable WRKY transcription factor 41
trEMBL	tr\|I1K6A3\|I1K6A3_SOYBN	6.00E-101	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G36970.1}

Sequence

Transcript Sequence

>Glyur000577s00027226.1
GAAGGCCGTCATTTCCTCCATTCAGCAAAAACCCTTCACTCNCGAGGTTTTTGCCCCTTCAGCCTCGTTCGTTCCCACTCTTTTCTTTCTGTTCCGACGTCCAAACCATTCAGTTTTCAGTCTGAACAAATCAATTTGAATTTCAAAGCTCATTCTACCTCCTTCCACATGTTCATGGCTCAGTACTATACTTCCTCATNCCTATGATGTTCTAAATTTCTTTGGTTTCCATAATCGTTCACTGCAAAATGGAAANTGACAGGAATAGCTGGGAACAGAACGCACTCATCAATGAGCTAATTCAGGGGATGGAGATAGCAAGAAAGTTGAAGGAAGACTTGAGCATACCCTCTTCAGATGACACAAGGGACATGCTGTTGCAAAGGATTTTATCTTCTTATGACAAGGCCTTAATAATTCTAAAATGGAGAGCATCAGTTTCCAAGTCACAGACACAAACCATGCATCATCATCAAGCAACTAAAACTTGGTCACCACCAGAGTCCACAGTATCCATCAACAGAACTCCTCCGAGGGTAGAAGAGGGTGTCAAAGATCATAAGGAGCTTAAACAGAACTCGAAGAAAAGAAGCTATTATAGGTGCATCTTCCGCAAAACCAAGGGCTGCTGGGCTACGAAGCAAGTACAGAGATCAGATGAAGACCCAACTATGTTTGACATAACATACCGAGGAAAACACACCTGTTCTCAGGCGCAAGAGAAACCGCATGGTTGTAACAATAGTGTTAGTGATGTTCCCCATGCACAGCCTTCACAAGAAAGCCTTGCCATTACAGAGTTCAGAAACACTTACCCGGGAAATGAAGAAACGGCAGCGTATCAGTTCACTTCCCCTTCTTCCCCTTCATTTGGATGCATGACACAAGATAACCACACCTTATTTCCTTCTATCCTGGAGAATGATCCCTTCTTGAGCAGCTTTTCCCAAACACACTTGTTATCTCCAGAAAAAACAGAACCAAACCATTCTCTATTTCCCTCTTTCGTCATAGATGACTTGGATGGGGTCCATAACGAGCCGGGTCCNGATTCTGATATTACTCGGATCATTTCCGCAAACACATCGGCCACCGATTCTCCAATTTTCGATTTCAATTTCTCACTAGATGCATTGAAAATTGATATAAATTTCCCTTTCAATGCCCCGGGATTTTAATCCTGATTGCACTTGAGAATAAATTTCATATTATATGTAGAAAGTTATGGTTAGCATTTGAATGCAATACTCCAAATTCGCATCTGTGTGAAAACGTATAGTCCANGCTTTGGAGGATTAACAATAGTAGAGAGTAATTAACTAAAGCATCTTACAAATATCTAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00577	72826	74675	+

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000577s00027226.1	PF03106.10	WRKY	105	154	4.50E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.169
SRR1783600	control	0.148
SRR1783602	moderate drought stress	0.085
SRR1811619	moderate drought stress	0.084

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.033
DRR006520	Root Summer glycyrrhizin high producing strain	11.630
DRR006521	Root Winter glycyrrhizin high producing strain	0.160
DRR006522	Root Winter glycyrrhizin high producing strain	0.162
DRR006523	Root Summer glycyrrhizin low producing strain	30.742
DRR006524	Root Summer glycyrrhizin low producing strain	30.761
DRR006525	Leaf Summer glycyrrhizin high producing strain	104.800
DRR006526	Leaf Summer glycyrrhizin high producing strain	104.581

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.916
SRR2868004	Drought Stress (root)	4.347
SRR2967015	Control (root)	5.529

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	220.773
SRR9715740	Leaf	184.386
SRR9715741	Leaf	249.004
SRR9715739	Root	2.525
SRR9715742	Root	18.662
SRR9715743	Root	13.900

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.231
SRR8749028	MeJA induced 9h	14.627
SRR8749029	MeJA induced 9h	5.529
SRR8749030	Uninduced	4.361
SRR8749031	Uninduced	0.813
SRR8749032	Uninduced	1.086

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.874
SRR8400027	Control - Root	3.863