Gene detail information of Glyur000577s00027225 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G53200.1 | 7.00E-21 | Homeodomain-like superfamily protein |
| NR | XP_006572889.1 | 1.10E-33 | PREDICTED: transcription factor CPC-like isoform X1 [Glycine max] |
| Swissprot | tr|O22059|CPC_ARATH | 2.00E-26 | Transcription factor CPC |
| trEMBL | tr|K7K5B1|K7K5B1_SOYBN | 4.00E-34 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G43435.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00577 | 63125 | 65967 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.867 |
| SRR1783600 | control | 1.806 |
| SRR1783602 | moderate drought stress | 1.121 |
| SRR1811619 | moderate drought stress | 1.134 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.543 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.035 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 39.297 |
| SRR2868004 | Drought Stress (root) | 89.250 |
| SRR2967015 | Control (root) | 18.859 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.426 |
| SRR9715740 | Leaf | 9.224 |
| SRR9715741 | Leaf | 2.965 |
| SRR9715739 | Root | 1.690 |
| SRR9715742 | Root | 2.285 |
| SRR9715743 | Root | 1.741 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.653 |
| SRR8749028 | MeJA induced 9h | 2.688 |
| SRR8749029 | MeJA induced 9h | 12.631 |
| SRR8749030 | Uninduced | 0.592 |
| SRR8749031 | Uninduced | 4.646 |
| SRR8749032 | Uninduced | 7.655 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.725 |
| SRR8400027 | Control - Root | 6.766 |