Gene detail

Gene detail information of Glyur000577s00027220.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G59220.1	1.00E-56	highly ABA-induced PP2C gene 1
NR	XP_004511520.1	1.97E-168	PREDICTED: probable protein phosphatase 2C 8-like [Cicer arietinum]
COG	YP_003709340.1	2.00E-19	serine/threonine PP2C protein phosphatase [Waddlia chondrophila WSU 86-1044]
Swissprot	tr\|Q5SN75\|P2C08_ORYSJ	5.00E-111	Probable protein phosphatase 2C 8
trEMBL	tr\|G7KAL2\|G7KAL2_MEDTR	4.00E-163	Phosphatase 2C family protein {ECO:0000313\|EMBL:AES93958.2}

Sequence

Transcript Sequence

>Glyur000577s00027220.1
ATGGATAGTAATAGTACCGCCGCCGACATAAAATCTAAAGCAATTCAGCGACGTTACGATTGTTACAGAAAGAAGAGGAAGCGTCCTTGTAAGGTGGCCGTGATTCCAACGAGCGTCAGCGGAGAAGAGATCAACTGCACCGCCACGTCATCGCACGGTTTCATATCGGTGATTGGACGGCGGAGGGCGATGGAGGACGCCGTCAAGGTGGTTCCAGGTTTCGTAACGGCGGAACGGCAACCGTCGCCGTCGTTGTCGTGCGGCTACGATTTCTTCGCGGTTTATGACGGTCACGGCGGGACCACGGTGGCAAATGCTTGTCGTGACAGGTTGCACTTGCTGTTGGCAGAGGAAATGAAGAGCAGGGATGTTCCGGGATTGGATTGGTATGAAGCCATGTGTTCCTGTTTCATGAAGATGGACCACGAGATTGGAGTTGGTGGTGGCGGCGACGGTGATGATGTCGGCGGGAACACGGTGGGTTCCACGGCGGCTGTAGTGGTGGTGGGGATGGAGGAGATTGTGGTGGCCAATTGTGGAGACTCTAGAGTGGTTTTGTGCCGTGGCGGCGTAGCTGTGCCACTTTCACGTGATCATAAGCCCGATCTTCCGGATGAAAAGGAGAGGATTGAAGCGGCGGGTGGAAGAGTCATTAATTGGAACGGGAATCGCGTTTTAGGAGTACTTGCTACTTCCAGATCCATAGGGGATCACTGCATGAAGCCATTTGTGATTTCTCAGCCAGAGATTAACGTGTATGCACGAACAAAATCAGATGAGTTTGTTGTAGTAGCGAGTGACGGTCTGTGGGATGTAGTGTCCAACAAGTTTGTTTGTGAAGTGGTGAGAAGCTGCCTCAAAGGGCATGTGAAGAGGAATTCAAAAGAGGACTCGATTCAAAGTGTTGCAGCAGAGGCGGCAGCATTGTTGGCTGAGTTGGCTATGGCTCGGGGAAGCAAAGACAACATCAGTGTTATAGTCATCCAGCTCAATAGTACAACTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00577	426	1993	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14497	PP2C	EC:3.1.3.16	MAPK signaling pathway - plant	map04016
			Plant hormone signal transduction	map04075
			Insulin resistance	map04931

Gene Ontology

biological_process
GO:0006470 protein dephosphorylation

molecular_function

GO:0003824 catalytic activity

GO:0004722 protein serine/threonine phosphatase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000577s00027220.1	PF00481.16	PP2C	53	323	8.70E-61

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.018
SRR1783600	control	0.018
SRR1783602	moderate drought stress	0.019
SRR1811619	moderate drought stress	0.008

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.377
DRR006520	Root Summer glycyrrhizin high producing strain	5.824
DRR006521	Root Winter glycyrrhizin high producing strain	17.319
DRR006522	Root Winter glycyrrhizin high producing strain	17.179
DRR006523	Root Summer glycyrrhizin low producing strain	1.360
DRR006524	Root Summer glycyrrhizin low producing strain	1.231
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.511
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.577

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.223
SRR2868004	Drought Stress (root)	0.535
SRR2967015	Control (root)	0.549

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.919
SRR9715740	Leaf	0.450
SRR9715741	Leaf	0.398
SRR9715739	Root	0.074
SRR9715742	Root	0.273
SRR9715743	Root	0.173

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.589
SRR8749028	MeJA induced 9h	6.242
SRR8749029	MeJA induced 9h	1.564
SRR8749030	Uninduced	4.405
SRR8749031	Uninduced	1.156
SRR8749032	Uninduced	1.185

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.226
SRR8400027	Control - Root	0.111