Gene detail

Gene detail information of Glyur000576s00032477

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G16060.1	6.00E-44	ARIA-interacting double AP2 domain protein
NR	XP_004507033.1	1.21E-117	PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060-like [Cicer arietinum]
Swissprot	tr\|Q94AN4\|AP2L1_ARATH	2.00E-68	AP2-like ethylene-responsive transcription factor At1g16060
trEMBL	tr\|A0A072UFX2\|A0A072UFX2_MEDTR	3.00E-117	AP2-type transcription factor {ECO:0000313\|EMBL:KEH28582.1}

Sequence

Transcript Sequence

>Glyur000576s00032477.1
CTTTCATGGCGAAGAAATCGCAGAAAAGCCTCAAGAACACTATTTTTTTTGCTACCACTGCCGCTACCACCGCGATTTTTTTTCGAACACGTAAGAGCATCCCAAGAGTTTTTTTTCCACAACGAAGCTCAATCTACCGGGTTTTTTTTAGACATCGATGGACTGGTCGATATGAGGCTCATTTGTGGGATTTTTTTTGCTGGAATGAATCACAAAGCAAGAAAGGAAGACAAGGGGCGTATGACGATGAAGAAGCTGCGGCACGTGCCTATGACTTGGCAGCATTGAAAAAAAGCAGTGGATTCTCTAGAGGAGTCTCAAAATACAGAGGAGTAGCAAGACACCACCACAACGGAAGATGGGAGGCTCGAATTGGCAGAGTTTTTGGCAACAAATATCTATACCTTGGAACTTATGCTACACAAGAAGAAGCAGCCACGGCATATGACATGGCAGCCATAGAGTACCGAGGGCTTAACGCCGTTACAAACTTTGACCTCAGCCGTTATGTCAATTGGTTACATCCCAAAACACAAGACAACAACCATCATCAAATTCAAGATCCTAGTAGCAACGATGACCAAGAAGAGCTAAACCTTAATAACCCTGAACTTGACGAGGAAGGTACATTTGTTGTCTCCCATCATGTTCACGGGCTTGGCCCAGCCGCCACCGGTGAGGCCAAGCCCGCCAATGTGGCACGATCAGGTCGTGCCACGTCAGCATCCTCCGCNCTTGGGCTTCTCTTGCAATCGTCAAAATTCAAGGAAATGCTAGAGAAGACTTCTTCAACGGCTCCCCCACCTGTGGAAGATTCAACCCCTCCTCGCCGTACGACGACGTTTCCCGAAGACATTCAAACAATATTTGAAGGTCAAGATTCAGGAATCTACACCCAAATCGATGAGGACATTAATATATTTGGTGACTTGAGTTCGTTAGCTGCACCAATTTTTCATTATGCGCTTGATGCTTGATTAATAATTAGGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00576	3553	7990	-

Gene family

Gene family	subfamily
Transcription Factors Family	AP2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000576s00032477.1	PF00847.15	AP2	46	96	3.10E-06
Glyur000576s00032477.1	PF00847.15	AP2	105	156	8.20E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.901
SRR1783600	control	5.498
SRR1783602	moderate drought stress	4.604
SRR1811619	moderate drought stress	4.651

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.218
DRR006520	Root Summer glycyrrhizin high producing strain	0.216
DRR006521	Root Winter glycyrrhizin high producing strain	0.337
DRR006522	Root Winter glycyrrhizin high producing strain	0.328
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.289
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.288

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.991
SRR2868004	Drought Stress (root)	12.129
SRR2967015	Control (root)	17.495

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.319
SRR9715740	Leaf	5.365
SRR9715741	Leaf	10.819
SRR9715739	Root	2.085
SRR9715742	Root	4.568
SRR9715743	Root	3.864

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.067
SRR8749029	MeJA induced 9h	0.061
SRR8749030	Uninduced	0.129
SRR8749031	Uninduced	0.115
SRR8749032	Uninduced	0.229

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.673
SRR8400027	Control - Root	19.123