Gene detail information of Glyur000575s00024834 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G01680.1 | 2.00E-47 | |
| NR | ADN32804.1 | 0 | sieve element occlusion by forisomes 3 [Medicago truncatula] |
| trEMBL | tr|E2FKJ2|E2FKJ2_MEDTR | 0 | Sieve element occlusion protein {ECO:0000313|EMBL:KEH40982.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00575 | 97247 | 107796 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000575s00024834.1 | PF14576.1 | SEO_N | 27 | 70 | 8.00E-10 |
| Glyur000575s00024834.1 | PF14576.1 | SEO_N | 71 | 178 | 3.50E-29 |
| Glyur000575s00024834.1 | PF14576.1 | SEO_N | 184 | 227 | 7.20E-10 |
| Glyur000575s00024834.1 | PF14576.1 | SEO_N | 228 | 373 | 1.20E-43 |
| Glyur000575s00024834.1 | PF14577.1 | SEO_C | 517 | 731 | 7.50E-63 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.659 |
| SRR1783600 | control | 6.617 |
| SRR1783602 | moderate drought stress | 5.664 |
| SRR1811619 | moderate drought stress | 5.519 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.190 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.291 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.043 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.044 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.168 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.989 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.190 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.145 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 32.449 |
| SRR2868004 | Drought Stress (root) | 26.703 |
| SRR2967015 | Control (root) | 30.877 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.548 |
| SRR9715740 | Leaf | 0.032 |
| SRR9715741 | Leaf | 1.097 |
| SRR9715739 | Root | 2.427 |
| SRR9715742 | Root | 8.691 |
| SRR9715743 | Root | 8.420 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.148 |
| SRR8749032 | Uninduced | 0.069 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.125 |
| SRR8400027 | Control - Root | 9.431 |