Gene detail

Gene detail information of Glyur000575s00024825.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G04240.1	1.00E-55	AUX/IAA transcriptional regulator family protein
NR	XP_003637551.1	2.88E-101	Auxin-induced protein [Medicago truncatula]
Swissprot	tr\|P32294\|AX22B_VIGRR	5.00E-103	Auxin-induced protein 22B
trEMBL	tr\|G7ZZQ0\|G7ZZQ0_MEDTR	1.00E-101	Auxin-induced protein {ECO:0000256\|RuleBase:RU004549}

Sequence

Transcript Sequence

>Glyur000575s00024825.1
CGACACCTTAGCTTGCCTTTGTCCATAATCTATGCATTGAATTTGAAAACAAAACAATGACAATGTCAAATTGATGTTGATTCCTTCTCATCTCACAGTTGCCACTACTCCTTCCTTTTATTATTTATCACTTTTTCCTATAAAACACATCCTTGCATTTCCAACTTTCCCCACAATTGATTGCACCACTAACAGAATTCCTTGAAGCTTGAAGCTTAATCACAATATTTTCTAACAGAAGAATTCTTGAATCAGAGGGCTTTGAATAGAAGAGTATTTGGGTCATTTGTATTATTTTGGCTAGTTTTGACAATGGAAAACAAGGTGGCATATGAGAATGATCATCTCAATAACCTCAAGGCAACAGAGCTTAGATTGGGGTTGCCAGGGACAACAGAGGAAAAANGAGAGGAGAGAAGTGTTAAAAACAACAGCAAAAGGCAATTGCCTGAAACTTCTGAAGAGTCTGTTTCCATTTCCAACAAGGCCTCATCACATGACCAACAACATCTAGATGCAGCCCCTCCTGCCAAGGCAAAGATAGTGGGATGGCCACCAATCAGATCCTATAGGAAGAACAGCTTGCAGGAGGCTGAGGGTGTTGGGATCTATGTGAAAGTGAGCATGGATGGAGCACCTTACCTCAGAAAGATTGACTTGAGGGTCTATGGGGGATACCCACAACTCCTCAAAGCTATTGAAACCATGTTCAAGTTGACCATAGGTGAATATTCTGAAAGAGAGGGTTATGAGGGATCTGAATATGCACCTACATATGAAGACAAGGATGGTGACTGGATGCTAGTTGGAGATGTTCCATGGGACATGTTTATGACTTCCTGCAAAAGGCTAAGAATCATGAAAGGCACAGAAGCTAGAGGTTTGGGAAACAACTAAACTACCATGACTATATGATGAACACTGTGAATGAAAAAAAGAGTTTTGGTGCTGAGGAAATCAATCAACCTTTTCAGCATGGGTTCTTGGAAGTAATGGATTTGGATTCAAGAGTATCCTACTACCATGCCCATGTCTGTAGTCGGAAGTGAGATGCAGGAAGATTCTTTCTACACATATACATGTTTGTCAACATTTTTGATTTTTTTTTTTTAGCATCTTGATCGATGGAGGTGCTTTATGCTATTGTTTCCACTGAACCTTTTCAGTGAGCAATATTCTCAGAAATTTGCCTCAAATGAACTTTGTACACTAGAAATACAAGAGAATTAGAAGGGATTGATGTTATGCATCCAAGTGGTTTGTTTTGTATCAATACAGACATACAGAAATTAAATACAGTGTAATACACCGAATATTTGTATAAGGTCATGTGACTTTTTTANATGGTTAAGTAACCATTAAATAACTTTTAATTCTAACAAGATTTTGGCTAGGGTGAGCAACTTTAACCATGGGAGATGTAAAAAAAAGTTTATGATGGACATGCATATCGCATATCACCTCCTTCCTCAAGCTCAAACCCAACCACCGTCACCGGCAACTCCCACCGGCAACCCACCCCTCCCTCTGCAACTGCCACTTGTGACCTACTAGTAAACAAATCTGTTAAGAGTTTGTTAGAGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00575	40998	43115	-

Gene family

Gene family	subfamily
Transcription Factors Family	AUX/IAA
EAR motif-containing Proteins	AUX/IAA

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function
GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000575s00024825.1	PF02309.11	AUX_IAA	14	192	2.50E-70

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.726
SRR1783600	control	6.772
SRR1783602	moderate drought stress	10.715
SRR1811619	moderate drought stress	10.815

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.811
DRR006520	Root Summer glycyrrhizin high producing strain	11.836
DRR006521	Root Winter glycyrrhizin high producing strain	14.216
DRR006522	Root Winter glycyrrhizin high producing strain	14.167
DRR006523	Root Summer glycyrrhizin low producing strain	19.068
DRR006524	Root Summer glycyrrhizin low producing strain	19.060
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.252
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.422

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.408
SRR2868004	Drought Stress (root)	28.150
SRR2967015	Control (root)	20.377

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.190
SRR9715740	Leaf	3.580
SRR9715741	Leaf	2.087
SRR9715739	Root	4.469
SRR9715742	Root	8.097
SRR9715743	Root	7.705

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	32.152
SRR8749028	MeJA induced 9h	30.258
SRR8749029	MeJA induced 9h	47.390
SRR8749030	Uninduced	16.758
SRR8749031	Uninduced	4.539
SRR8749032	Uninduced	10.284

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.962
SRR8400027	Control - Root	20.753