Gene detail

Gene detail information of Glyur000575s00024823.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G33580.1	5.00E-44	Protein kinase superfamily protein
NR	XP_004498011.1	0	PREDICTED: lysM domain receptor-like kinase 4-like [Cicer arietinum]
COG	YP_007779934.1	3.00E-15	Serine/threonine protein kinase [Roseburia intestinalis XB6B4]
Swissprot	tr\|O64825\|LYK4_ARATH	8.00E-65	LysM domain receptor-like kinase 4 (Precursor)
trEMBL	tr\|G7JWJ0\|G7JWJ0_MEDTR	0	LysM-domain receptor-like kinase {ECO:0000313\|EMBL:AES96862.2}

Sequence

Transcript Sequence

>Glyur000575s00024823.1
ATGACCAACACAAACTCCAAACCCCATCACCACCATCCCCACTTCTTCACCCTCTTGTTCTTCCTCTTCTTTCTCCCAATACTCAATGCCCAAACACAGAGACAACAAAACAACACAGGCTACGAGTGCAGCACAACCAGCAACACAAATTACCCATGTCAAGCCTATGCTTTCTACCGAGCCACATCCCCAAACTTCCTCGACTTAGCCACAATAGGTGACCTCTTCTCAGTTAGCAGACTCATGATCTCAAACCCAAGCAACATCTCTTCCCCTTCTTCCCCTTTAGTCCAAAATCAACCCCTCTTTGTTCCCTTATCCTGCTCTTGTAACCCCGTCAACACCACTTTTGGTTCCATCTCCTATGCCAACATCTCCTACGCCATCAAACCCAATGACACCTTCTTCCTTGTCTCAACCATTCAGTTCCAAAACCTCACCACTTACCCTTCTGTTGAAGTTGTCAACCCAACACTTGTCGCTACAAACCTNTCCATTGGTGACAACGTCATATTCCCAATCTTCTGCATGTGTCCCAATAAAAATACCACCACAAACACAAGCACCTTCAATTACATGATCTCCTATGTTGTTCAACCCTCTGATAACATCTCATCAATTGCTTCAATGTTTGGGTCACAAGAACAGTCAATTGTTGATGTAAATGGTGAAACACTTCATGATTATGACACCATCTTTGTTCCTGTGACAAAGTTGCCTGTTCTGTCACAACCCACTGTTGTTCCTTCTCCTCCACCTTCTTCTACTCCTTCAAGTGGAGGCTCTGATAGGACTGGGACTGTTAGAGGGTTGGCTATTGGGTTGGGAATTACTGGGCTTTTGTTGATTTGTGTTATTGGGGTGTTGGTTTTGTTCAAGGGTAGGTTGTGGANTGTGAGAGATGATGATGAGGAGGAACAGAAGTTGAATTTTGGAAGGAAAGAACAGGGCAAAGGAGGGAGTAGTAAGCAAATTATGGATGTGAAGTTGATGGCTAATGTGTCTGATTGTTTGGATAAGTATAGGGTTTTTGGAATTGAGGAGCTGATTGAGGCCACTGATGGGTTTGATGAAAGTTGTTTGATTCAAGGGTCTGTTTATANAGGGTCAATTGATGGAGAGTTGGAGGGATTTTGCATAGACCCAGAAGAAGCAAACTGTTATTTAGTCTATGAATATGTGGAGAATGGATCTCTCTACTCATGGTTACACGAGGACAAAAACGAAAAGCTAAGCTGGAAAACAAGGCTTCGAATAGCCATTGACATAGCCAATGGTCTTCAATACATCCACGAGCACACAAGGCCACGTGTTGTGCACAAAGACATNAAGAGCAGCAACATTCTCTTGGACTCCAACATGAGGGCCAAGATTGCAAACTTTGGTCTAGCGAAGTCAGGAATGAATGCCATCACAATGCACATTGTGGGAACACAAGGCTACATTGCCCCTGAATATCTAGCTGATGGTGTGGTCTCAACAAAGATGGANGTGTTCTCTTTTGGGGTTGTGCTTCTTGAACTCATTTCTGGGAAGGAGGCAATCGATGAGGAGGAAGGGAATCTCTTGTGGGCAAGTGCAATTAAAACATTTGACGTGAGCAATGAGCAAGAGAAGGGTAGGAGANTGAAGGAGTGGTTGGATAAGGCTATTTTGAAGGAGACATGTTCAATGGAGAGTTTGATGGGTGTGCTCAATGTTGCAATTGCTTGTTTGCATAGAGACCCATCAAAAAGGCCCAACATAGTGGACATTGTCTATTCNCTTTGTAAGAGTGAAGAGACTGGCTTTGACCTCTCAGATGAAGGGATTGGTTCGCCAAAGTTGATGGCTAGGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00575	28032	31949	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04733	IRAK4	EC:2.7.11.1	NF-kappa B signaling pathway	map04064
			Toll-like receptor signaling pathway	map04620
			Toll and Imd signaling pathway	map04624
			NOD-like receptor signaling pathway	map04621
			Neurotrophin signaling pathway	map04722
			Pertussis	map05133
			Tuberculosis	map05152
			Measles	map05162
			Influenza A	map05164
			Toxoplasmosis	map05145
			Leishmaniasis	map05140
			Chagas disease (American trypanosomiasis)	map05142

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000575s00024823.1	PF01476.15	LysM	196	234	0.00078
Glyur000575s00024823.1	PF00069.20	Pkinase	383	586	8.00E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	42.509
SRR1783600	control	42.754
SRR1783602	moderate drought stress	67.959
SRR1811619	moderate drought stress	67.597

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.495
DRR006520	Root Summer glycyrrhizin high producing strain	19.069
DRR006521	Root Winter glycyrrhizin high producing strain	9.294
DRR006522	Root Winter glycyrrhizin high producing strain	9.127
DRR006523	Root Summer glycyrrhizin low producing strain	55.358
DRR006524	Root Summer glycyrrhizin low producing strain	55.434
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.357
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.525

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	46.118
SRR2868004	Drought Stress (root)	52.358
SRR2967015	Control (root)	46.449

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.302
SRR9715740	Leaf	19.478
SRR9715741	Leaf	40.078
SRR9715739	Root	15.150
SRR9715742	Root	42.790
SRR9715743	Root	41.775

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	42.608
SRR8749028	MeJA induced 9h	173.222
SRR8749029	MeJA induced 9h	75.637
SRR8749030	Uninduced	56.255
SRR8749031	Uninduced	120.673
SRR8749032	Uninduced	72.616

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.826
SRR8400027	Control - Root	34.576