Gene detail

Gene detail information of Glyur000574s00030973.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G65140.1	8.00E-129	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
NR	XP_006601938.1	0	PREDICTED: probable trehalose-phosphate phosphatase J-like [Glycine max]
COG	YP_003951497.1	2.00E-50	beta-phosphoglucomutase hydrolase [Stigmatella aurantiaca DW4/3-1]
Swissprot	tr\|Q5HZ05\|TPPJ_ARATH	8.00E-161	Probable trehalose-phosphate phosphatase J
trEMBL	tr\|I1MYT2\|I1MYT2_SOYBN	0	Trehalose 6-phosphate phosphatase {ECO:0000256\|RuleBase:RU361117}

Sequence

Transcript Sequence

>Glyur000574s00030973.1
CTCTTTTTCGCTCACATTCCTTTACACTTCTCTGTATGCACCGCTTCATATGCTAACAAAGCTGTCATCTTTCTTTTTCTCTCTGCTCTGTTCTGCTATAAAAGAGCACACAGTATTATTTGGAGTTAATAATTTCCTCATCAGAACGCAGAAGCTGAGATTAATTCTCTGTGAAGATGACACAGCAGAATGTGGTAGTGTCTGACACCAAATCTGGAGTTGCTGTATCAGTTTTNCCAACAACATCCCAAAAGCCCCCAACAGCACCAGGAGGAGGAGGAGGAGGAGGTTACAACAACATTTCCATTCCTAGAAGGAGGGTTCTCAAAGACCTTGAAATCAATGGAGGAAAAAGAATCAATGCATGGGTTGAGTCCATGAGAGCCTCTTCTCCAACCCATCTTAAATCATCCACAACTTCTTTGGCTGAAGAACAAAGCTCTTGGATTCTTCACCACCCGTCGGCATTAGACATGTTTGACCAAATTGTGGATGCATCAAAGGGAAAGCAAATTGTCGTGTTTCTCGACTATGATGGTACACTATCTCCAATAGTTGACGACCCTGACCGTGCTTTTATGTCAGATTCGATGAGGAAAACAGTGAGGAAACTTGCAAGGTGTTTTCCTACTGCTATAGTCACNGGCAGATGCAAAGACAAGGTATACAATTTTGTTCGCTTGGCAGAGCTATATTATGCTGGAAGCCATGGTTTGGATATTAAAGGGCCAACAAGAAGCTCCAAATACAACAAAGATACCAAAGCTGAAGCAGTTTTTTTTCAACCTGCCAGTGAATTTCTTCCTATGATAGATGAGGTGTACCAACAACTGGTTGATAAGACAAAATCAACTCCTGGAGCCAAGGTTGAGAACAACAAGTTCTGTGTCTCTGTTCATTTTCGCTGTGTTGATGAAAAGAAATGGAGTGAACTGGCACACCAAGTGAAATCAGTGTTAAAGGACTACCCNAAGCTTCGCCTTACCCAAGGAAGAAAGGTGGGCCATGATTTTGTGCTAGAGATTCGTCCCACTATTAAATGGGACAAAGGAAAAGCCCTGGAATTTTTATTAGAGTCACTCGGATTGGCCAACTGTAACGATGTCTTTCCTGTTTATATTGGCGATGATCGATCTGATGAAGATGCGTTCAAGGTATCCAAAGATCTCAATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00574	30736	33360	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01087	otsB	EC:3.1.3.12	Starch and sucrose metabolism	map00500
			Starch and sucrose metabolism	map00500

Gene Ontology

biological_process

GO:0005992 trehalose biosynthetic process

GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000574s00030973.1	PF02358.11	Trehalose_PPase	116	330	4.20E-69

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.506
SRR1783600	control	3.314
SRR1783602	moderate drought stress	4.759
SRR1811619	moderate drought stress	4.828

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.498
DRR006520	Root Summer glycyrrhizin high producing strain	7.642
DRR006521	Root Winter glycyrrhizin high producing strain	1.056
DRR006522	Root Winter glycyrrhizin high producing strain	0.995
DRR006523	Root Summer glycyrrhizin low producing strain	5.081
DRR006524	Root Summer glycyrrhizin low producing strain	5.045
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.596
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.535

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.627
SRR2868004	Drought Stress (root)	7.710
SRR2967015	Control (root)	15.431

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.716
SRR9715740	Leaf	5.043
SRR9715741	Leaf	10.292
SRR9715739	Root	0.307
SRR9715742	Root	10.348
SRR9715743	Root	7.615

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.625
SRR8749028	MeJA induced 9h	0.053
SRR8749029	MeJA induced 9h	0.098
SRR8749030	Uninduced	0.041
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.062

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.908
SRR8400027	Control - Root	9.781