Gene detail

Gene detail information of Glyur000573s00021781.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G55140.1	5.00E-153	Pectin lyase-like superfamily protein
NR	XP_004497319.1	0	PREDICTED: putative pectate lyase 21-like isoform X2 [Cicer arietinum]
COG	YP_003976318.1	1.00E-44	pectate lyase family protein [Achromobacter xylosoxidans A8]
Swissprot	tr\|Q9FM66\|PLY21_ARATH	1.00E-53	Putative pectate lyase 21 (Precursor)
trEMBL	tr\|I3T7N6\|I3T7N6_LOTJA	0	Pectate lyase {ECO:0000256\|RuleBase:RU361123}

Sequence

Transcript Sequence

>Glyur000573s00021781.1
TCTCAATCAACAAATAATCTGAAACGGATCAATGTCTAAATTTTGTTGTCAAAAGAATAAAATGTAACGTGGGAGTACTGGGACGATCTGGACAAAATTAAGCGCATATAGGTACGTATTTGTGTGTGTGATTTTGAAGAATTGAATTGAATTGAAGAAAGAGTGGAGAGATGGCGTCGATGCTGCCATACGGAGATGTAGATTCCAGCCTGAGGGCCATGGCCGGTCGTGCCGAGGGTTTCGGCCGCCTCGCCATCGGTGGCCTCCACGGCCCTCTCTATTCCGTCAACTCCCTTTCAGATGATGGTCCTGGGTCCCTTCGCGAAGGATGTCGTAGAAAGGAGCCACTATGGATTGTTTTTGAAATCTCAGGTACGATTCATCTTTCATCATACCTGAGTGTGTCATCTCATAAGACAATAGATGGCAGAGGCCAGAGGATAAAATTGACCGGAAAGGGCTTAAGGCTGAAAGAATGTGAGAATATAATTATATGCAACCTTGAGTTCGAGGGTGGTAGGGGTCATGATGTGGATGGCATTCAAATAAAACCAAATTCTAGGAACATTTGGATAGATCGTTGCAGCCTCCGTGATTATGATGATGGGCTTATTGACATTACAAGGCAGAGCACGGATATTACTATATCTAGATGTCACTTTGCACAGCATGACAAGACCATGCTCATTGGAGCTGACCCGTCACACGTTGGTGATCGATGCATCCGGGTGACGATTCATCATTGTTTCTTTGATGGAACACGCCAAAGACAGCCTCGTGTGAGATTTGGAAAAGTTCATCTGTACAACAATTACACCAGAAACTGGGGAATATATGCTGTTTGTGCCAGTGTTGAGTCCCAGATATACTCTCAATGCAACATATATGAAGCAGGAACTAAGAAAAAGACTTTTGAATTCTATACTGAGAAGGCAGCAGATAAGGAAGAGCAAGCATCTGGCTTCATAATATCTGAAGGAGACATGCTTCTGAATGGTGCTCAGCCTTGCTTACTAACAGAATACAGAGAAAAACCCATGTTCCATCCTAGTGAATATTACCCAACGTGGACGATGGAAGCAGCTACACATTCTCTCAGAGATGTCCTTCAGTTATGTACAGGTTGGCACTCCATTTGTAGGCCAATAGACCGACCACATGGTCTCTAAATAAAGATTCGTTGCATTGCAGGAGTATACCTTCTGGGCTTATGCGACACCGTTCACATTCCAACAAAGCAACGTTTAAGAGAAAAGGTTTAATTTTGCCGTTCTTTTAATTTAAAAGTAGTACCAGCACAATTATTGTAGTTTTAAAAATCAGATCGGACTGCCTGAATCGACTGGAAAACTAATTAATCAGTCCGATGTCCGGTCCAATGTATTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00573	84403	86581	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	PL1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01728	pel	EC:4.2.2.2	Pentose and glucuronate interconversions	map00040
			Quorum sensing	map02024

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000573s00021781.1	PF00544.14	Pec_lyase_C	63	238	6.20E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	36.752
SRR1783600	control	37.153
SRR1783602	moderate drought stress	30.912
SRR1811619	moderate drought stress	30.802

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	48.611
DRR006520	Root Summer glycyrrhizin high producing strain	47.783
DRR006521	Root Winter glycyrrhizin high producing strain	77.859
DRR006522	Root Winter glycyrrhizin high producing strain	75.941
DRR006523	Root Summer glycyrrhizin low producing strain	43.755
DRR006524	Root Summer glycyrrhizin low producing strain	43.338
DRR006525	Leaf Summer glycyrrhizin high producing strain	29.984
DRR006526	Leaf Summer glycyrrhizin high producing strain	29.847

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	40.155
SRR2868004	Drought Stress (root)	42.831
SRR2967015	Control (root)	43.454

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	32.748
SRR9715740	Leaf	37.983
SRR9715741	Leaf	36.430
SRR9715739	Root	21.491
SRR9715742	Root	26.774
SRR9715743	Root	24.192

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	31.924
SRR8749028	MeJA induced 9h	38.125
SRR8749029	MeJA induced 9h	24.207
SRR8749030	Uninduced	43.570
SRR8749031	Uninduced	43.796
SRR8749032	Uninduced	28.862

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	50.827
SRR8400027	Control - Root	46.487