Gene detail

Gene detail information of Glyur000573s00021773

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G75270.1	5.00E-96	dehydroascorbate reductase 2
NR	AFK38549.1	7.13E-138	unknown [Lotus japonicus]
COG	YP_007172684.1	5.00E-21	glutathione S-transferase [Dactylococcopsis salina PCC 8305]
Swissprot	tr\|Q9FRL8\|DHAR2_ARATH	1.00E-120	Glutathione S-transferase DHAR2
trEMBL	tr\|I3SE57\|I3SE57_LOTJA	3.00E-138	Uncharacterized protein {ECO:0000313\|EMBL:AFK38549.1}

Sequence

Transcript Sequence

>Glyur000573s00021773.1
ATGCTAACTAGGATTGCAAGTGCAAATTCCTATAATAATGGTGTGAACCCAGCAGATCGTAAACACACTATTCTCATTTTCACGTTGTTGATCGCAGCATTTGTTTCCGTTAACGCACATCATCCATCGCAAATGGCTCTTGAGGTTTGCGTGAAGGCAGCTGTCGGTGCTCCGAATGTTCTGGGAGACTGTCCATTTTCCCAAAGGGTCCTCTTAACTTTGGAGGAGAAGAAGATCCCACACAACATCCACCTAATCGATCTCAGTAACAAACCCCAATGGTTTTTGGATGTGAATCCCGAAGGGAAGGTGCCAGTGGTTCAGTTTGATGGTAAATGGGTGCCTGATTCTGATGTTATTGTGGCGAAACTCGAGGAAAAATACCCAGAACCCCCTCTCGCTACTCCTCCTGAATTTGCCTCCGTGGGATCAAAGATATTTGGGTCTTTCGTGAGCTTTCTGAAGAGCAAGGAGGCAAATGATGGAACAGAGCAAGCGTTGGTTGCTGAATTGAGTGCTCTGGATGAACATCTCAAGGCTCATGGTCCATATGTTGCTGGGGAGAAGATCACTGCTGTTGATTTGAGTTTGGCACCAAAACTGTACCATCTAGTGGTAGCACTTGGCCACTTCAAAAATTGGACTATCCCTGAAAGTTTGGCACATGTTCACAACTACACCAAGTTGCTCTTCTCCCGGGAATCATTTGAGAAAACCAAGGCTGCAAAGGAATATGTGATTGCTGGATGGGCACCAAAGGTCAATGCATGAAGCAGCTCTAAATTATGCGTTTGATGAGGCATCAGATATGTTGTTGTGATTGAACTTTGTTGAGAATAGGATGGTGAGGTGAAACTTATCAATTTGAACAGTTGAAGTGTGTTGTTCCCTCTATATAATATAATAAATTTGTAGTTTGTTCGTGTCTAGTGTTTAACCATTAATGTGTTCATTCCACTGGCTGGCTGAAATGTAATCACACACACGCTACAATACATATGCGCACACACACACACACACGCATTATGCATACACACTGATGACAAACGTCAGAATGGTCTTCACCCACTTCTTAAGTTCTCATGAATGCCCAACGTGACCCCTTTCCGTCGAATCGCATCATCATCAATCAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00573	33769	37014	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000573s00021773.1	PF13417.1	GST_N_3	63	132	2.00E-20
Glyur000573s00021773.1	PF13410.1	GST_C_2	164	227	2.90E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	138.221
SRR1783600	control	139.128
SRR1783602	moderate drought stress	81.478
SRR1811619	moderate drought stress	81.507

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	82.788
DRR006520	Root Summer glycyrrhizin high producing strain	82.021
DRR006521	Root Winter glycyrrhizin high producing strain	44.360
DRR006522	Root Winter glycyrrhizin high producing strain	43.143
DRR006523	Root Summer glycyrrhizin low producing strain	36.861
DRR006524	Root Summer glycyrrhizin low producing strain	36.983
DRR006525	Leaf Summer glycyrrhizin high producing strain	95.443
DRR006526	Leaf Summer glycyrrhizin high producing strain	94.314

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	306.863
SRR2868004	Drought Stress (root)	216.051
SRR2967015	Control (root)	200.512

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	177.982
SRR9715740	Leaf	97.563
SRR9715741	Leaf	110.362
SRR9715739	Root	106.697
SRR9715742	Root	137.400
SRR9715743	Root	134.413

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	124.821
SRR8749028	MeJA induced 9h	56.028
SRR8749029	MeJA induced 9h	112.880
SRR8749030	Uninduced	34.957
SRR8749031	Uninduced	13.862
SRR8749032	Uninduced	41.490

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	205.982
SRR8400027	Control - Root	158.094