Gene detail information of Glyur000573s00021769 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G50310.1 | 0 | Galactose oxidase/kelch repeat superfamily protein |
| NR | XP_004501827.1 | 0 | PREDICTED: LOW QUALITY PROTEIN: kelch domain-containing protein 4-like [Cicer arietinum] |
| COG | YP_004232947.1 | 4.00E-13 | Kelch repeat type 1-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] |
| Swissprot | tr|Q8H4D4|TYW23_ORYSJ | 3.00E-17 | tRNA wybutosine-synthesizing protein 2 homolog |
| trEMBL | tr|V7AZB0|V7AZB0_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW09948.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00573 | 14 | 8081 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000573s00021769.1 | PF13415.1 | Kelch_3 | 83 | 132 | 4.00E-08 |
| Glyur000573s00021769.1 | PF13415.1 | Kelch_3 | 135 | 187 | 2.40E-10 |
| Glyur000573s00021769.1 | PF13415.1 | Kelch_3 | 190 | 244 | 3.50E-05 |
| Glyur000573s00021769.1 | PF13415.1 | Kelch_3 | 246 | 304 | 4.50E-06 |
| Glyur000573s00021769.1 | PF13418.1 | Kelch_4 | 445 | 488 | 0.00016 |
| Glyur000573s00021769.1 | PF13422.1 | DUF4110 | 572 | 663 | 1.90E-34 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.310 |
| SRR1783600 | control | 7.350 |
| SRR1783602 | moderate drought stress | 8.063 |
| SRR1811619 | moderate drought stress | 7.877 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.673 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.719 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.113 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.201 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.816 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.936 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.482 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.755 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.176 |
| SRR2868004 | Drought Stress (root) | 16.888 |
| SRR2967015 | Control (root) | 16.601 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.761 |
| SRR9715740 | Leaf | 15.183 |
| SRR9715741 | Leaf | 16.895 |
| SRR9715739 | Root | 1.345 |
| SRR9715742 | Root | 7.714 |
| SRR9715743 | Root | 6.567 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 23.599 |
| SRR8749028 | MeJA induced 9h | 18.224 |
| SRR8749029 | MeJA induced 9h | 11.301 |
| SRR8749030 | Uninduced | 2.468 |
| SRR8749031 | Uninduced | 0.823 |
| SRR8749032 | Uninduced | 1.231 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.165 |
| SRR8400027 | Control - Root | 19.873 |