Gene detail information of Glyur000572s00019047 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G17800.1 | 5.00E-58 | Predicted AT-hook DNA-binding family protein |
| NR | XP_003516633.1 | 4.20E-112 | PREDICTED: putative DNA-binding protein ESCAROLA-like [Glycine max] |
| Swissprot | tr|Q9S7C9|ESCA_ARATH | 1.00E-49 | Putative DNA-binding protein ESCAROLA |
| trEMBL | tr|I1J9J5|I1J9J5_SOYBN | 2.00E-112 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G40680.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00572 | 142979 | 143791 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000572s00019047.1 | PF03479.10 | DUF296 | 87 | 202 | 1.50E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.155 |
| SRR1783600 | control | 4.543 |
| SRR1783602 | moderate drought stress | 8.972 |
| SRR1811619 | moderate drought stress | 5.956 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.733 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.984 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.412 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.402 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.221 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.356 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 35.748 |
| SRR2868004 | Drought Stress (root) | 43.169 |
| SRR2967015 | Control (root) | 44.240 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.328 |
| SRR9715740 | Leaf | 0.249 |
| SRR9715741 | Leaf | 1.408 |
| SRR9715739 | Root | 28.390 |
| SRR9715742 | Root | 15.858 |
| SRR9715743 | Root | 17.143 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 31.173 |
| SRR8749028 | MeJA induced 9h | 25.963 |
| SRR8749029 | MeJA induced 9h | 27.178 |
| SRR8749030 | Uninduced | 33.303 |
| SRR8749031 | Uninduced | 6.844 |
| SRR8749032 | Uninduced | 20.150 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 25.527 |
| SRR8400027 | Control - Root | 17.623 |