Gene detail

Gene detail information of Glyur000572s00019045

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G46640.1	2.00E-45	AT hook motif DNA-binding family protein
NR	XP_007155774.1	4.83E-140	hypothetical protein PHAVU_003G230500g [Phaseolus vulgaris]
Swissprot	tr\|Q9S7C9\|ESCA_ARATH	6.00E-12	Putative DNA-binding protein ESCAROLA
trEMBL	tr\|V7CEI0\|V7CEI0_PHAVU	2.00E-140	Uncharacterized protein {ECO:0000313\|EMBL:ESW27768.1}

Sequence

Transcript Sequence

>Glyur000572s00019045.1
GTTTTATTTTTACAATCCCCAGTTCTGTCTCTTACAAAAAAGCGCACTCTCTCTCTCTCTCTCTCTCTCCCCCTCTCCTCTCTTATGATCAACCTGCAAACAGAAAGCCAAGCCAACACTCCTGCATTTCGGTTATCCATTCATTTCTCTCTTCTGATCCGCCGCGATGGATTCTCGGGAACAGCCTCAGCCCCACCAGCAGCAGCCCCAACCGCAATCTCAACCGCCAAGCGTGATGGTGGGTCCCAGTTCCTTCCCCAACAGCATGACGAATCCCTCGTCGATGATGGCCCCTGCAACCGCTCGATTCCCCCCATTCAACAATAACAACAACCCTCCTCCCCCTTCGGAGCCTTTCAACAACAACAACGACAACACCACCTTGAAGCCCTGCGGTTTGGGCCCCTCTGACTCCNCCAAAAAGAAGAGGGGCCGGCCCAGGAAGTACTCTCCCGATGGCAACATTGCTTTGGGCCTGGCCCCAACCCACGTGTCCTCTCCCTCTTCCTCTTCCGCTAAGAAGAATCGTGGAAGACCCCCTGGCTCTGGAAAGAAGCAGCTCGATGCCCTCGGAAACGGTGGCATTGGTTTTACTCCCCATGTAATATTTGTCGATAGTGGCGAGGACATTGTTGCAAAAATTTTGGCCTTTTGTCAGCAAGGACCTCGGACGGTTTGCATTCTTTCTGCCAATGGTGCAATCTGCAATGTCACCCTTCGACAGCCGTCGGTGGCTGGGGGTACTGTGACTTATGAGGGACAATTTGAAATTATATCCCTGTCAGGTTCCGTACTGCTATCTGAAAATAATAGTGGTCGTACCAGAATGAGTGGCTTGAGTGTGTCTGTAGGAGGGTCTGATGGACGAGTTCTGGGCGGCGCAGTTGCTGGAAAGCTTACTGCTGCAGCCCCAGTACAGGTCATTGTGGGTAGTTTTATTTCGGATGGCAAGAAGTCTAGCTCAAATAACCTGAAATCTGGGCCTTCTTCAACGCCATCATCCCAAATGTTAACTTTTGGTGCTCCTGTGACTCCAACCAGTCCTACCTCTCAAGGGCCTTCAACTGAGTCCTCTGATGACAATGAGAATAGTCCTTTTAGTAAGGGGCCTGGACTCTACAACAATGCTAGTCAGCCCCTTCACAATATGCCGATGTACCACCATCAACTATGGGCTGGCCAAACACAGCAGTGAGGATGCGCTTTTAGGTTTAACAGTGCAGAAGCAGCAGGGTATTTGCCTGATGATTTGTTCAAAGTAGTGGCTAGAAAAAAGTCAAATTCTAAAATGCTAACATGCATTTTATTGGGGACTAATTNTAGGAGAGTCTATCTAAAGTTCTATATCTATTTTTCTTCATTTTTCTGCTGAATTAGGATTTTCAAATCATAATTGAAGCATTGCTAGTGAGGATAGCTTTTGGTTAATGAGCTTATTACCGATTTGGATCGGCTTGTGTTTATGAGTTAATATGAGTTATGCACCCCCCCCCCCTTTCTCTCATCTGAGTTGCTTACTCATGGCATTGACCACCTTCAGGCTTCAGCCCTCTTTCTTTCATTCTTGCTGTGCTTGTAGTAGAGATTATCTGATCAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00572	126449	131179	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000572s00019045.1	PF02178.14	AT_hook	85	96	0.019
Glyur000572s00019045.1	PF02178.14	AT_hook	118	129	19
Glyur000572s00019045.1	PF03479.10	DUF296	142	259	9.40E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.095
SRR1783600	control	12.844
SRR1783602	moderate drought stress	7.960
SRR1811619	moderate drought stress	8.363

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.191
DRR006520	Root Summer glycyrrhizin high producing strain	11.900
DRR006521	Root Winter glycyrrhizin high producing strain	3.009
DRR006522	Root Winter glycyrrhizin high producing strain	3.006
DRR006523	Root Summer glycyrrhizin low producing strain	8.080
DRR006524	Root Summer glycyrrhizin low producing strain	7.893
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.500
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.663

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.237
SRR2868004	Drought Stress (root)	9.940
SRR2967015	Control (root)	9.530

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.809
SRR9715740	Leaf	2.583
SRR9715741	Leaf	2.582
SRR9715739	Root	10.001
SRR9715742	Root	11.530
SRR9715743	Root	7.978

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.040
SRR8749028	MeJA induced 9h	9.627
SRR8749029	MeJA induced 9h	13.054
SRR8749030	Uninduced	8.263
SRR8749031	Uninduced	3.854
SRR8749032	Uninduced	4.537

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.340
SRR8400027	Control - Root	13.508