Gene detail

Gene detail information of Glyur000572s00019040

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G17970.1	9.00E-137	aluminum-activated, malate transporter 12
NR	XP_003516635.1	0	PREDICTED: aluminum-activated malate transporter 12-like [Glycine max]
Swissprot	tr\|O49696\|ALMTC_ARATH	0	Aluminum-activated malate transporter 12
trEMBL	tr\|I1J9K0\|I1J9K0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G40760.1}

Sequence

Transcript Sequence

>Glyur000572s00019040.1
ATGGTCCCTATTAATGTTTATGCTGGAAAGGAAATGGCAATGGGTGAGAATGAGAATNAGAATGGCAGAATCAATGGGAACTGGAATAAACGTATGCATGTTTTTGGTGAGAAGTTGAGGAGGTTCCCTAGTTTGGCTTGGCAGACTGCATGGAAGGTGGGGCGTGAAGACCCAAGAAGGGCTATCCATGCATTCAAAGTGGGTTGTTCTCTCACTCTAGCTTCTTTGCTGTATCTGTTGGAGCCATTTTACAATGGGATTGGGCAGAGGGCAACTTTATGCAAAGGGCTCAACAGAGGATTGGGGACACTCCTAGCGGGATTCTTGGCATTTGCTATTGGGTATATTGCAAATGTATCCGGTCGGGTCTTTCAAGCTGTTTTCATTGGTGCTGCAGTTTTACTTATAGGAACTGTAGCTACTTATATGAGGTTCATTCCATATATAAAGAAGAACTATGACTATGGTCTAGTTATATTTCTCTTGACTTTCAACTTGATTACTGTGTCGAGCTACCGTGTTGACAATGTCTTGAAGATTGCACATGACCGCATATACACCATTGCCATAGGATGTGCCATTTGCCTTCTCATGAGTCTACTCATATTTCCAAATTGGTCAGGAGAAGACCTCCATAATTCCACCGCTTTCAAGCTTGAAGGCCTTGCCAAATCTATAGAGGCTTGTGTCAATGAATACTTTTATGGAGAAATTGAAGCCTCTGGAGATATCAAAACGTCCGAGGATCCCATATACAAAGGTTACAAGGCTGTTTTGGATTCAAAATCCACTGATGAAACATTGGCATTACAGGCAAGTTGGGAGCCAAGGCATTCCAGAGCCATGTTCAAGGACCCTTGCATACGGCTTGCAGCAGAGGTATCCAAAGTACTGATAGAACTTTCCAACAGCATAAGGAACCGCCGCCATTGCTCTCCCGAAATACTCTCCGATCATCTCCATGAAGCCCTGCAGGATCTTAACACTGCCATAAAATCTCAACCTCGCCTCTTCTTAGGCCCCAAGCACAAGCACAACCAAGCTAACAACATGCTCAAAATAGCTGCTGCACAAGTTGGGCAAGGAAGACATGGAAAGGCCTATGGAGGCTCCCTATCAAGCGTTAAAACCGACTCTTCTGCACTTCTAGAATGGAAAACCAAAAGGGCATCTGCTGAACAGTCAAAGGAAACAGAAAGAAAGTCTTTGAGACCCCAATTGAGTAAAATTGCAATCAACAGCCTTGAGTTCTCTGAGGCTCTTCCTTTTGCTGGTTTTGCATCTTTGCTTGTGGAGACAGTGGCAAAACTGGACCTTGTCATTGAGGAAATTGAAGAACTGGGGAGATTGGCATGCTTCAAAGAGTATAGACCTGGTGATGAGATTGTCGTGACTTGTGAGGAACCCCGAGTTGATGTGTTACAGAACCACTTACCTTCTCATGGAGTAGACTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00572	108368	111383	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015743 malate transport

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000572s00019040.1	PF11744.3	ALMT	51	286	2.10E-90
Glyur000572s00019040.2	PF11744.3	ALMT	51	90	3.30E-10
Glyur000572s00019040.2	PF11744.3	ALMT	91	228	1.80E-59

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.057
SRR1783600	control	0.057
SRR1783602	moderate drought stress	0.077
SRR1811619	moderate drought stress	0.079

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.112
DRR006520	Root Summer glycyrrhizin high producing strain	0.111
DRR006521	Root Winter glycyrrhizin high producing strain	0.411
DRR006522	Root Winter glycyrrhizin high producing strain	0.509
DRR006523	Root Summer glycyrrhizin low producing strain	0.114
DRR006524	Root Summer glycyrrhizin low producing strain	0.115
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.634
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.599

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.089
SRR2868004	Drought Stress (root)	0.115
SRR2967015	Control (root)	0.001

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.828
SRR9715740	Leaf	12.788
SRR9715741	Leaf	13.157
SRR9715739	Root	0.000
SRR9715742	Root	0.065
SRR9715743	Root	0.032

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.129
SRR8749028	MeJA induced 9h	0.182
SRR8749029	MeJA induced 9h	0.537
SRR8749030	Uninduced	0.224
SRR8749031	Uninduced	0.319
SRR8749032	Uninduced	1.476

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.026
SRR8400027	Control - Root	0.060