Gene detail

Gene detail information of Glyur000572s00019038.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G17980.1	2.00E-74	NAC domain containing protein 71
NR	XP_004511780.1	2.53E-171	PREDICTED: NAC domain-containing protein 89-like isoform X2 [Cicer arietinum]
Swissprot	tr\|Q9FFI5\|NAC86_ARATH	3.00E-62	NAC domain-containing protein 86 {ECO:0000312\|EMBL:AED92405.1}
trEMBL	tr\|G7JZX4\|G7JZX4_MEDTR	2.00E-169	NAC transcription factor-like protein {ECO:0000313\|EMBL:AES94428.2}

Sequence

Transcript Sequence

>Glyur000572s00019038.1
GTGGGTGGAGGGTGGGGGTGAGATAGCTTTCACAAGAGAACTAGAATTCCTTTTATTACGATGATTCTGGCACATAATGGATNCACTCCATTGAAGTGTCACTTGACTCTTGATAAAAACTATATTGTAGATAAAAGCTTTTATTTTTGGATCTTCCAGATTTTTAATAGATATAGTGTGGGTACCTAGCACATGTTCTAATTACATCCTTCCAAAATATCAGGATTCAACTTGTTTTTTTCAATCTTTCACCGTAAAGCTTTTGGCTTTGTTGGAGGAAGTTTTAAGTTCACTTTTGTGGTGTTAAACTGAGATTGAAGACACTAGCTGGGAATATAGCTTTTTTTTTTCTTTTTCTTTTCAGCTTCCATTTTTTGCCCTTTAAATATATAGTAAGGAACACAGAGATTATTAGAATGGGAGGGGCATCACTGCCTCCAGGTTTTCGTTTCCATCCAACAGATGAAGAACTGCTAGGGTATTACCTAAAAAGAAAAGTGGAGGGGCTTGAAATTGAGCTTGAAGTTATCCCCGTGATTGATTTGTACAAATTTGATCCCTGGGAGTTGCCGGATATGGAATGGTTTTTCTTCTGTCCACGGGATCGCAAGTACCCAAATGGGTCACGGACAAATAGAGCTACCAAAAGTGGATACTGGAAAGCCACCGGAAAAGACAGGAAGGTTGTGTGCGAGGAGTCTAGTGATCCATTCACTTCTTCCAGGTACCGTAAGACCCTTGTTTTCTATCGTGGAAGAGCCCCCTTGGGTGATCGAACCAACTGGCTCATGCATGAGTATCGCCTCTCCGATGATCCTATTCCTGCCCAAGCCTCACAGGGTGCTTTTGCTTTGTGCCGAGTTATTAAAAAGAATGAGAAGGCCAATGATTCCAAAGGACAAAAGGTTTCCAACAGTAATGGGAATGACACCCCAATGAGATTCTCCAACGAGCTCTTCACTACCATCTCTGGTGACATTTCCTCTCAGGTGAGTCAAGTGGGCAGTGAGAGTCGCTATTCAAGTCCTATTGATTCCCCTTGCAATGTGGCTCCTGTGACCCGGTTTGAGCAACCTTCCACTAACACCAATCCTTCAAGCTTCTGGCTTTCCCCTGATATGATTCTTGATTCTTCAAAGGACTACTCTCAATCTCAAATACAAGATGTTGTTGGATACTTTCCACAGCAGCATGACTCATCGAGTACAATGACAGTGACACCGTGGCAATCATTGGAACACACAGAAATTTCACCCAGTTCATCCTACTCAAATTTTAATGGGGAAATTGAGTTTTCTGATGTTCTCAGTCGAATTGGCTGCTGCATGTCACCTTACTCAGGACAAGGAAGCTTCATGGACTTGTACTATGTGAATGAGGATAATCATATGCCTTATGAATGCCATGACCAAATTAATTCATTCAGGGACCCAAAACAATTCTGAAAAGAAAAGGAAGAACAATATAATAGGATTGTGATGTGAGGGACGAGAAGGGGTGGATCTCTAAGACAACGCCTTTTAATGTCTGTCTTGGAGGGATAAATAATGATTAATGAGTACAATCCCCTTCANATGCACCAGACAAGACAGAAACTATAGTATCTTCTTCAAGTGCTATTTCTTGACTTAGTTTGTAATTTATGCTGTTGATGTTGTGTAGGATTCCCGGGTGACATCACTTTTATCGATTTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00572	105209	107684	+

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000572s00019038.1	PF02365.10	NAM	6	130	2.90E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.281
SRR1783600	control	1.267
SRR1783602	moderate drought stress	1.195
SRR1811619	moderate drought stress	1.246

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.873
DRR006520	Root Summer glycyrrhizin high producing strain	2.640
DRR006521	Root Winter glycyrrhizin high producing strain	0.715
DRR006522	Root Winter glycyrrhizin high producing strain	0.627
DRR006523	Root Summer glycyrrhizin low producing strain	6.118
DRR006524	Root Summer glycyrrhizin low producing strain	5.693
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.323
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.231

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.022
SRR2868004	Drought Stress (root)	2.331
SRR2967015	Control (root)	3.206

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.374
SRR9715740	Leaf	0.234
SRR9715741	Leaf	0.411
SRR9715739	Root	0.228
SRR9715742	Root	1.334
SRR9715743	Root	0.710

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.606
SRR8749028	MeJA induced 9h	0.122
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.090
SRR8749032	Uninduced	0.059

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.784
SRR8400027	Control - Root	1.642