Gene detail

Gene detail information of Glyur000572s00019035

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G32470.1	2.00E-56	Single hybrid motif superfamily protein
NR	ACJ85876.1	2.28E-97	unknown [Medicago truncatula]
COG	YP_003323225.1	2.00E-38	glycine cleavage system H protein [Thermobaculum terrenum ATCC BAA-798]
Swissprot	tr\|Q39732\|GCSH_FLAAN	8.00E-91	Glycine cleavage system H protein, mitochondrial (Precursor)
trEMBL	tr\|B7FM93\|B7FM93_MEDTR	9.00E-98	Putative uncharacterized protein {ECO:0000313\|EMBL:ACJ85876.1}

Sequence

Transcript Sequence

>Glyur000572s00019035.1
NAAGAATGTTTGCTAATTGGATAAAATATTAATGCATAACAAGATAAAGTGTCATAAAGAAGATGAGACCGTGCAAGAGGATGAGGCACTCGCTACCCACCATTCATCCAAGATAAAAAAACAACAAATGAAAGAGCCTCATCTCATTGTTTCAGTGATATTATTGTACCCACAACACAACACAGAAAAACAGAGAAGCACACAACTCTCATCTCTGAAACATCCTATTCCTAATGGCACTCAGGATGTGGGCTTCCTCAACCGCCAATGCACTCAAACTCTCTTCTTCTTCTTCTTCTTCCAGATTACATCTCTCCCCTCCCTTTTCCCTCTCCAGATGCTTCTCCACCGTCTTGGATGGACTCAAGTACGCATCTTCACATGAATGGGTCAAGCACGAAGGCTCAGTGGCCACCATTGGTATCACTGATCATGCCCAGGACCATCTTGGAGAGGTTGTGTTTGTGGAGCTGCCAGAATCCGGTGGCTCAGTTACCCAGGGTAACGGCTTCGGAGCAGTTGAGAGTGTTAAAGCAACAAGTGATGTAAACTCTCCTATATCAGGGGAGGTTATTGAGATCAACTCAAGCCCATACGAAGATGGATGGATGATCAAAATAAAGCCAAGTAGTCCATCTGAATTAGATTCCTTGTTGGGTCCAAAGGAGTACACAAAGTTCTGTGAGGAAGAAGATGCTGCACATTGAAGTTTGNATTTGCTCCTTCAGTTATATGGGACTGACATGTATTTCATATGTCTATGATCTTGTTATCTTCTGAACAATTTTTTTTTCAAGTACAATGGAACTGCTTCTGCTTCAAGCCATTTTTCTTTCCCTGCTATTGTCACTGACACTTCAGTGTGTCTACCTCCTCGTGTAATTAAGAAGCAATTTTCTCTTTCACTTCTATGCATTATCATTTTCACCTGCGGTGCTTTAAGCATTTTCACTGGCTTGGTTGGAGGCAGAAGTTGGAAACTAACGTTGTGTTTTCAATTGCATGAAGTTGCTGATAAAAATCAGAATTTAAAATGTGGGCAAATTAAAAGCATCTTTTGAGAGAACATAGCTCATAAATATCATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00572	81345	83319	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0019464 glycine decarboxylation via glycine cleavage system

cellular_component
GO:0005960 glycine cleavage complex

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000572s00019035.1	PF01597.14	GCV_H	44	152	2.60E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.994
SRR1783600	control	1.825
SRR1783602	moderate drought stress	2.082
SRR1811619	moderate drought stress	2.113

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.886
DRR006520	Root Summer glycyrrhizin high producing strain	0.857
DRR006521	Root Winter glycyrrhizin high producing strain	0.232
DRR006522	Root Winter glycyrrhizin high producing strain	0.295
DRR006523	Root Summer glycyrrhizin low producing strain	0.681
DRR006524	Root Summer glycyrrhizin low producing strain	0.732
DRR006525	Leaf Summer glycyrrhizin high producing strain	802.080
DRR006526	Leaf Summer glycyrrhizin high producing strain	788.979

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.533
SRR2868004	Drought Stress (root)	8.757
SRR2967015	Control (root)	1.724

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	338.013
SRR9715740	Leaf	358.007
SRR9715741	Leaf	203.726
SRR9715739	Root	2.330
SRR9715742	Root	0.903
SRR9715743	Root	1.135

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.441
SRR8749028	MeJA induced 9h	0.402
SRR8749029	MeJA induced 9h	0.613
SRR8749030	Uninduced	0.059
SRR8749031	Uninduced	0.070
SRR8749032	Uninduced	0.233

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.531
SRR8400027	Control - Root	1.534