Gene detail

Gene detail information of Glyur000572s00019034.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G05160.1	2.00E-141	cytochrome P450, family 88, subfamily A, polypeptide 3
NR	XP_004512204.1	0	PREDICTED: beta-amyrin 11-oxidase-like [Cicer arietinum]
COG	YP_007123031.1	8.00E-55	cytochrome P450 [Microcoleus sp. PCC 7113]
Swissprot	tr\|B5BSX1\|BAMO_GLYUR	0	Beta-amyrin 11-oxidase
trEMBL	tr\|G7JZW7\|G7JZW7_MEDTR	0	Cytochrome P450 family ent-kaurenoic acid oxidase {ECO:0000313\|EMBL:AES94421.1}

Sequence

Transcript Sequence

>Glyur000572s00019034.1
ATGGTGTCACTAGATTCTCCCTTGTGGTTCATCCTGGTAGCTGCTTTGTTGGGTGGATATGCATTTGTGTTTGGGTTCCTTAGGAGAGTGAATGAGTGGTACTATGCTGGGAGGTTGGGAAAGATGCAACACCCTCTCCCACCTGGTGACATGGGTTGGCCTTTCCTCGGCAACATGCTCACCTTCCTCAAAGCTTTCAAGTCTGACCCTGATTCCTTCATCCATGACCTTGTTTCCAGGACTCACTTATTTGGAAGCCCCAGCATCATAGTATGCACCCCAGAGACATGCCGTAAGGTACTCACAGATGAGGAGCAACTGAAGCTTGGATACCCTGCTTCCACCATGGCCCTCACAGGGAAGAGATCATTCCACGGCATCTCAAATGCGGAGCACCGGCGTCTCCGCCGCCTAACCACCGCTCCCATAAATGGCCACGACGCATTGTCCATGTACATAGGCCTCATTGAGGGCATTGCTGTGAAACAGTTGGAAGAGTTATCCAGCATGGAAAGGCCTTGTGAGTTCCTCACTGAGATGAGGAAGTTTGCTTTTGAGGTCATCACCACCATCTTCGTAGCCTCTGAATCTGACGGTGCAGATCATCATCATCATCATCATCATGTGGACCTTGGTTTGGTGGAGAATTTGTACACTGATTTGAATAGGGGAATTAAGTCCCTCGCCATCAACCTTCCAGGCTTTGCATTCCATAAAGCACTCAAGGCACGAAAGAAGTTGATGAAGCTGCTGCAAGCCTTGGTGGACCAAAAGAGGAGGACCAATAATACAGAGACATTAAAGACGAAGAAAGATATGATGGATTTGTTGATGGAAGTCAAAGATGAAGAGGGTAGGAAGCTGGAGGATGAAGACATCATAGACCTACTTCTGGTGTTNTTGTTAGCCGGTCACGAAAGCTCTGCACATGGAATATTGTGGACCATCATCTACCTCATGGATCACCCCCATGTCTTCCACACGGCCAAGAAAGAACAAGAAGAGATCATGGAAACAAGACCTTCCACACAGAAAGGGCTGAACCTTGAGGAAATTAAGCAAATGAAATATCTTTCAAAGGTTATTGATGAGATGCTGCGCAGAACAAGTATCTCGTTTGCAAACTTTAGACAGGCAAAAGTTGATGTCAACATCAATGGTTACACTATACCAAAAGGATGGAAAGTTCTGGTTTGGAACAGAGGTGTTCACATGGATCCTGAAACTTACNCCAACCCAAAGGAATTTGATCCTTCCAGATGGGAAAATTACAAAGCAAGAGCAGGATCTTTTCTTCCGTTTGGATTAGGAAGCAGGTTTTGTCCCGGAAGCGACCTGGCTAAGCTTGAGATCACCATTTTCCTCCATCATTTTCTTCTTAACTACAGGATGGATAGACTTAATCCACAGTGTCCGGTTACCTACCTACCTGTGCCAAGGCCTTCAGATAACTGCCTTGCAAGAATTGTAAAAGTAACATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00572	77433	80361	+

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP88A3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04123	KAO	EC:1.14.13.79	Diterpenoid biosynthesis	map00904

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000572s00019034.1	PF00067.17	p450	47	466	1.60E-68

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.163
SRR1783600	control	6.161
SRR1783602	moderate drought stress	2.262
SRR1811619	moderate drought stress	2.350

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.634
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.525

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.953
SRR2868004	Drought Stress (root)	2.073
SRR2967015	Control (root)	1.799

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.219
SRR9715740	Leaf	0.113
SRR9715741	Leaf	0.102
SRR9715739	Root	2.976
SRR9715742	Root	2.977
SRR9715743	Root	1.960

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.101
SRR8749028	MeJA induced 9h	0.964
SRR8749029	MeJA induced 9h	1.639
SRR8749030	Uninduced	12.352
SRR8749031	Uninduced	24.859
SRR8749032	Uninduced	8.646

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.061
SRR8400027	Control - Root	17.517