Gene detail

Gene detail information of Glyur000572s00019032

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G32450.1	1.00E-114	nitrate transporter 1.5
NR	XP_003611453.1	0	Peptide transporter PTR1 [Medicago truncatula]
COG	YP_004291222.1	5.00E-14	amino acid/peptide transporter [Methanobacterium sp. AL-21]
Swissprot	tr\|Q9LQL2\|PTR14_ARATH	1.00E-159	Protein NRT1/ PTR FAMILY 7.3
trEMBL	tr\|G7JZV7\|G7JZV7_MEDTR	0	Peptide transporter {ECO:0000313\|EMBL:AES94411.1}

Sequence

Transcript Sequence

>Glyur000572s00019032.1
TGGCATTTTAACATGTACAGTTTTTTTGGTCCTTTTGGATGATTATGTCTCAAAAATCTCCACCGTTCATGCCACCCTCCCTTTCTCTATCTATTGATTGTTACTCCCACTTCTCCCCTCTATATATCTTGTGTAACTTTCGTTCTTCTCTTCAGCCTTCAGCACCTTCCTCTGCTACCTAGAGTACCCTCCCCTGCATTTTGCTTCAAACAAATACAAACTTGAACCCCTTCTTTGAGATCACCAATAATGTCTTGCTTAGAGTTCGATGTCTCCAAAGAGGAGAAGTTCAAAGAAGAATCAGAAGAATTCACTCTTGATGGGAGNGTTGATTTGCAAGGCCGTCCTGCAATCAGAGCCAAATCTGGAAGATGGGTTGCTGCAATTATCATACTCTTGAACCAAGCTCTGGCAACTCTTGCATTCTTTNGTATTGGAGTGAACCTTGTTCTATTCCTGACAAGGGTGGTAGGACAAAATAATGCAGAGGCCGCTAACAATGTGAGCAAGTGGACTGGAACTGTTTACATCTTCTCTCTTGTGGGTGCTTTCCTTAGTGATTCTTATTGGGGAAGATATAAAACATGTGCTGTCTTTCAGGTCATCTTTGTAATAGGTCTAATGTCATTATCCCTGTCATCATATCTCTTCTTGATTAAACCTAAAGGTTGTGGCAATGAATTGATTCAATGTGCGAAACATTCAAAATTGGAGATGGGGATGTTCTACCTCTCAACCTATCTCATTGCCTTGGGGAATGGAGGGTATCAACCAAACATTGCCACATTTGGGGCTGATCAGTTTGATGAAGAGCACTCAAAGGAGGGTCACTCTAAGGTGGCCTTCTTTAGTTACTTCTACCTAGCTTTGAACATTGGGCAACTCTTCTCAAACACCATTCTGGTCTATTTCGAAGATGAAGGAATGTGGGCTCTTGGTTTCTGGCTATCTGCAGGCTCTGCCTTTGCCGCATTGGTATTGTTTCTTGTAGGCACCCCAAGATACCGACACTTCAAGCCTAGTGGCAACCCTCTCTCCAGATTCTGCCAAGTCCTTGTTGCTGCATCAAGGAAAGCAAGAGTTCAAATGCCATCCAACGGAGAGGACTTATATGATGTGGATACAAAGGAGTCTTCCACCAATGTGAACAGAAAAATCCTCTACACAGACGGGTTCAAGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00572	58094	62832	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000572s00019032.1	PF00854.16	PTR2	110	307	4.90E-43

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.565
SRR1783600	control	1.416
SRR1783602	moderate drought stress	1.471
SRR1811619	moderate drought stress	1.411

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.399
DRR006520	Root Summer glycyrrhizin high producing strain	9.378
DRR006521	Root Winter glycyrrhizin high producing strain	0.441
DRR006522	Root Winter glycyrrhizin high producing strain	0.638
DRR006523	Root Summer glycyrrhizin low producing strain	9.940
DRR006524	Root Summer glycyrrhizin low producing strain	8.544
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.691
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.771

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	61.936
SRR2868004	Drought Stress (root)	102.171
SRR2967015	Control (root)	84.855

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.109
SRR9715740	Leaf	0.063
SRR9715741	Leaf	0.315
SRR9715739	Root	1.890
SRR9715742	Root	22.139
SRR9715743	Root	14.654

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.209
SRR8749028	MeJA induced 9h	0.047
SRR8749029	MeJA induced 9h	0.140
SRR8749030	Uninduced	0.010
SRR8749031	Uninduced	0.103
SRR8749032	Uninduced	0.036

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.020
SRR8400027	Control - Root	3.729