Gene detail information of Glyur000572s00019026 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G32400.3 | 4.00E-82 | tobamovirus multiplication 2A |
| NR | XP_004511769.1 | 1.88E-144 | PREDICTED: tetraspanin-20-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9C5W7|TOM2A_ARATH | 1.00E-105 | Tobamovirus multiplication protein 2A |
| trEMBL | tr|I1J9L3|I1J9L3_SOYBN | 7.00E-142 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G40890.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00572 | 25806 | 31263 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000572s00019026.1 | PF00335.15 | Tetraspannin | 6 | 114 | 1.70E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 24.206 |
| SRR1783600 | control | 24.691 |
| SRR1783602 | moderate drought stress | 25.754 |
| SRR1811619 | moderate drought stress | 25.961 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 32.745 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 32.495 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 73.561 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 71.358 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 41.434 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 40.994 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.190 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.517 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 40.796 |
| SRR2868004 | Drought Stress (root) | 41.230 |
| SRR2967015 | Control (root) | 38.676 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 30.674 |
| SRR9715740 | Leaf | 35.000 |
| SRR9715741 | Leaf | 39.549 |
| SRR9715739 | Root | 18.939 |
| SRR9715742 | Root | 23.933 |
| SRR9715743 | Root | 25.100 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 20.749 |
| SRR8749028 | MeJA induced 9h | 25.261 |
| SRR8749029 | MeJA induced 9h | 21.883 |
| SRR8749030 | Uninduced | 14.880 |
| SRR8749031 | Uninduced | 9.086 |
| SRR8749032 | Uninduced | 12.125 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 37.478 |
| SRR8400027 | Control - Root | 36.582 |