Gene detail

Gene detail information of Glyur000572s00019025.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G18020.6	2.00E-107	CheY-like two-component responsive regulator family protein
NR	XP_003538769.1	0	PREDICTED: two-component response regulator-like APRR2-like isoform X1 [Glycine max]
Swissprot	tr\|Q6LA43\|APRR2_ARATH	1.00E-131	Two-component response regulator-like APRR2
trEMBL	tr\|K7LMZ7\|K7LMZ7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G04441.1}

Sequence

Transcript Sequence

>Glyur000572s00019025.1
TTTTCCATGTTCTGTGATGATTAGATTAAAGTATAGCTCCTTGAATCAAGCTTGTGATCTCATGGATCTTGCAGAACGGATTGGATTGTTGATAAGCAGTGTTGACCTGTTGTGTTACTTGTGTAGGGGACAGAGAGACGATGCCAAACCAGCTATGGTTTGCACTGCCAANGATTTACAAGGATGGAAAGATTTCCCAAAGGGACTTAGGGTTCTCCTCCTTGAAGGAGACAGCGGTTCTGCTGCCGAGATAAGCGCAAAGCTTGAGGCTATGGACTATAATGTTTCTACCTTCTACAATGAGAATGAAGCCTTGTCAGCAATCTCAAGTAGTCCCGAAGGCTTCCATGTTGCTGTAGTGGAGGTGAGTGCAAGCTGTAGCCAGGGAGGTTTCAAATTTCTTGAGAATGCGAAGGACTTGCCAACCATTATGACTTCAAATAGTCAGTGCCTGAACACAATGATGAAGTGCATTGCGCTTGGCGCAGTTGAGTTCCTCACTAAACCACTCTCTGAGGACAAGCTGAAAAATATTTGGCAGCATGTGGTTCACAAGGCATTCAATGCTGGGTCTGAATCACTAAAACCTGTCAAAGAATCTGTGGAGTCCATGTTGCAGCTCCAAGCAGACAAGGGACAACTTGAAAATAGTACAATTTCAATAGATTTAGAGAATGTGTCCAAGTTNAGTGATAATGACCATGAGCAGTCTGCTGGAAGTGATAAATATCCAGCTCCTTCAACCCCGCAATTAAAACACGGGGCAAGGTTACTGGATGATGGGGATTGCCATGAGCAGACTAATTGCTCCATAGAAAANGAGAGTGGGGAACATGATGGGGAATCTAAATCCATCGAAACTTCGTGTGAGAATTTGAATGCTGAAAGTTCTCCTCAACCAAGGAAACCTGAGGAGACTCTGATCAAGGAGGAAGAGGATTTTGCCAATGGCTCCAAGGATGAGAATGCTGCTTCACCGAATCCGCATAATAGAAAGTTTCTCAGCAATGCTGATGGTAATACATCTCCAAATAAAACAGGTGTTCTTAATGATTCGTGCAAGAATAAAGCTAATCGGAAAAAGATGAAAGTAGACTGGACGCCGGAGCTGCACAAAAAATTTGTGAAGGCAGTGGAACAACTAGGCATTGATCAAGCCATTCCTTCTCGAATATTGGAGCTAATGAAAGTGGAGGGCTTGACAAGGCATAATGTNGCAAGCCATCTTCAGGTTTTTGTTGAACAGAAATATAGAATGCACAAGAGGCAAATCATGCATCATGGGGAAGAAGATAGAAAATGGCCAAATCAAAGAGATCCAATGCAAAGGAACTATTGTCTGCAAAGGCCAATCATGGCTTACCCTCCACCATATCATTCTAATCNCACCCTTTCTCCAGCTCCTATATATCCAATGTGGGGCCAACCTGGAAGTCAAACAGCTGGTGTACAAATGTGGGGCCCTCCTGGTTATCCTATGTGGCAGCCTACAGAAAGTTGGCACTGGAAGCCTTATGCGGGGATGCATGTGGATGCATGGGGTTCCCCAGTGTTGCCGCCTCCACAAGCTCCTTGTTTCCCCTACACTCAAAATNTAGCTGGGTTGCACAATACTAAAGCAGTGGATTATAGATTTGGCATGCCACGAAGTTCCTTTGAGCATTATCCGGCAGAGGAGGTGGTGGACAAGGTTGTGAAGGAGGCAATGAGCAAGCCATGGCTACCATTGCCCTTAGGACTCAAACCTCCTTCCACGGACAGTGTGTTGGCTGAGCTCTCCAAGCAAGGCATCTCCAGCAATAGCATCCCTTTTGGCAGCAGGAGCAACAACAACAAGGGCTCTAAGTCTAAACCCCGCTGACGTGTACCCCCCAACCCCCACTGGGTCCCACTATGGCCATGGTTGGCTGGCATGGGCCACTCATGCATCAATGCCCCCTGTGGACAGTGTGGACTCTCCTTGTAATTATATATGTTGTATCTCAACTCACCAGTGCTATCAACACATTCTCTAACGTACTCTTTTNATCGTACTTTTTATGATCGGTTGAAATCCACGTGGATCCCATTAAATCATGTGGGTCCCATATTCTATTTAGTAAGTGGTGGGACCTACATAGATTTCAACCATAATCATGGAGGGAGAGTATGATAGAAAGAACGTGTTACAAAGTGTGTTGTCGGCATTTTTTATCTCTCAGGTTCCAACTACAGTAAGATAGATTTGCTGGGAAGTTGTTGGGGCCATTTCTTTTTTGCCACGTGGTCCCCACCCCCAACACACCGACCAACTCGTGATGTCTCTCTCTCCACCGCAATACGATGATGATGCCACCAAACACATGGACATGGATCCCTATCCCTTGCCACTTGTTGCCAAAAATAAAANAGGTTCTGTTCAGCAGTTTTTAATGCATGCCAGTGCATGGCAATTGAGAACTGGCCACACACACATTTGATGGGGATGTGGCGGGAGGGGGGATTTCTGGGTTGTGAATGACCCAATTGGCCAATTTTCATTTGTGGGGGATATCAACNATCAAGTCTCTGTGTTATGTTGCTGTTGGTGTTGTTGGGCAGGGGGGCCTAGTAGAGGTATCTAATAATGCAACAGATAGGTAGGATTGATGTGAATAAAGATGAGTACACAGGCTTAATTGGAGGATGCTATATATGCTAACTTGTACTTCTTTCCCCCATTCAATTTGTTCAGCTGTTTCAGCTAAATTCAGGATTGAGAACAAACAGGATNGTCAAGGTAAGGTGTTCGTATATGCTAGCTAGTATAACACTTTGAGGCTACCCTTCTATATTTTCTTCAATTTATTTTTTAACGTTTTGAAAGCAATTCTAAGACATATAAATCTTGTATTTATGATTGTTAATTTGTTTTGGAGTGATCATGNTTTGGAGTGATCATTTTTAAGGCACTTGAACATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00572	13452	19679	+

Gene family

Gene family	subfamily
Transcription Factors Family	ARR-B
EAR motif-containing Proteins	ARR-B

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0000160 phosphorelay signal transduction system

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000572s00019025.1	PF00072.19	Response_reg	72	172	8.90E-05
Glyur000572s00019025.1	PF00249.26	Myb_DNA-binding	359	407	2.40E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.349
SRR1783600	control	9.459
SRR1783602	moderate drought stress	11.153
SRR1811619	moderate drought stress	11.064

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.021
DRR006520	Root Summer glycyrrhizin high producing strain	22.547
DRR006521	Root Winter glycyrrhizin high producing strain	9.293
DRR006522	Root Winter glycyrrhizin high producing strain	8.745
DRR006523	Root Summer glycyrrhizin low producing strain	18.373
DRR006524	Root Summer glycyrrhizin low producing strain	18.302
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.395
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.458

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.692
SRR2868004	Drought Stress (root)	10.506
SRR2967015	Control (root)	8.771

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.723
SRR9715740	Leaf	28.312
SRR9715741	Leaf	37.229
SRR9715739	Root	3.972
SRR9715742	Root	15.142
SRR9715743	Root	12.912

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.316
SRR8749028	MeJA induced 9h	19.475
SRR8749029	MeJA induced 9h	8.055
SRR8749030	Uninduced	43.505
SRR8749031	Uninduced	15.717
SRR8749032	Uninduced	27.680

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	32.270
SRR8400027	Control - Root	34.746