Gene detail

Gene detail information of Glyur000571s00026041

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G40240.1	4.00E-60	nodulin MtN21 /EamA-like transporter family protein
NR	KHN23420.1	2.95E-173	Auxin-induced protein 5NG4 [Glycine soja]
Swissprot	tr\|Q9FL08\|WTR42_ARATH	1.00E-72	WAT1-related protein At5g40240
trEMBL	tr\|G7J673\|G7J673_MEDTR	2.00E-170	Nodulin MtN21/EamA-like transporter family protein {ECO:0000313\|EMBL:AES72417.1}

Sequence

Transcript Sequence

>Glyur000571s00026041.1
ATGAAGAAGGATTTGGGAGTGTTTGCAATCATGTTAGTAGTAGAGTTCTTGGAAGTTACAATCAACACTGTGAGCAAAGCAGCCATGACNAGAGGCATGAATGATTTTGTGTTTGTCATGAAACAAACCCTTCAGCCACTCACATATCGCATCGTTGGCCAATTATTTGTTGTTGGCTTGCTCAGTATTCAGATGCTCAAGAATTTTGGCATAGGTTACAGCTCTCCTACTTTGGCTTCAGCAATGTCTGATTTAATCCCTGGTTTTACCTTCATACTTGCCCTTGTATTCAGGATGGAAAAACTAGACTACAAAAGTAATAGCACTCTGGCCAAGTCTTTTGGAACATTAGTATCAATCACTGGGGCCTTGATAATTACTCTGTACAAAGGCCAGGCAATCATAAATAATCATCATCATTCTTATANTAAGTTGTTGCCTTACAAGCTTCTTTCATCATCTATGCAATTTGACTGGGTACTTGGGGCAGTTTTGCTTGCTGCTCATAGCTGCTTTCTCTCATTGATGTACATAGTTAAGACATGGCTAATCAGAGACTACCCTGCAGAGCTTATGGTGACACTCATCCGCAACGTGTTGGTCTCTATGCTATCTGTTCCAGCTGTGTTGATTTCAACAAGAGATTCAGAAGCTTGGAGACTTAGACTTGATATGGAGTTGTTAGCTATTGGATGTTCTGCAATTTTCACTGTCTCTTTTCGAAGTGTGGTCCATATCTGGGCCATGGGAAAGAAGGGACCTNTCTTTGTTGCAATGTTTAAGCCACTTCAAATAGTCTTTGCAGTCATCATGGGTATTACTTTTCTTGGAGACTCTATATATTGGAAGAAGAGAAGGTGGAGGAAAACTGTGAAGTCTATAGCTCCACATCAAACTCGCCAGAGATTTGAACGTCCTCCAATCACGTTTTCCACCCTTTGTGGATTCTTCTCACTTGGACTACTCGGGCAAGTTTTTGGATACGCTGGGATTTACTACAGCTCAGCAACACTCAGCACGGCCATGCTCAATCTTGTTCCTGGTTTTACCTTCATACTTGCCGTTGTTTTTAGAATGGAACAATTAGATTGGAGAAGCTCTAGCAGCATAGCCAAATCATTGGGAACGATAGTGTCAATTGCTGGTGCATTTATTGCGACTTTGTACAAGGGCCCTGCTCTTCTGATGGGACTATCATCTGCAAACTCGTCTCAGCAGCCACTTCTCTCACAGGATTCTAATTGGATACTCGGAGGATTATTTCTTGCGGCCGATTGTGTGATGGCTTCAGCATATATTATAGTACAGGCTTCTATTCTTAAGAAATATCCAGCAGAGTTGATTGTTGTATTCTTTTATTGTTTCTTTGTGACCATTCAATCTGCTGTGACCTGTTTGGTTGCGGAAAGAGACATCAGTGCCTGGAGTTTGGAACCTAAGTTAAGGTTGCTAGCAGTTCTATACTCGGGAATTGTTGGTTCCGCATTTCAAGTTGGTGTTACTACGTGGTGTTTGCACCAGACAGGACCTGTTTTTGTTTCCATGTTCAAGCCCTTAGGAATTGTCATATCAGTGGTTATAGGTGTTGTCTTCCTTGGGGATGCATTCTATCTTGGAAGTCTGGTTGGTGCTACTGTGATTGTTGTTGGGTTTTATTCTGTATTGTGGGGGAAATTCAAAGATTATGAAATGAGAAGCTTGGAATCAAAAGGCAAACAGACCCCTCTGTTGAAGGAAAACAGCAGTGAAGACACATAAAGGTGTTAGTTCATTTAAAAGGATGATAGAATTCTGCAAGCAAATAGGCAGTTTCAGTTGTTTTACTCAGAGTAAGGGAGACAACTCTGACTCTTAAAAGTGTATTATTTTCTCTCCCTTTCATTGGGGGATGGATTGAGGGAAACCAATGAAAATTAAAGGTCAAATCATTAAGAATGATATAGATTTAAGTGACCTGTCTTTAAACATGATTTATAATAAAACATAATGACAGCGCTTGGTTCATATAACCAACCGCCCAACCTCATAGAAAAGGCTTTGCCTTTGATTGTTGTTGTTGTGGGAAAAAGCTTTTTTTTGGGTCATCCCCCGCGCTTGTGTAGGACTAATCCTTTTGAGTCGAGGACTCGTTAGGGCAGTAAAGCTCTACCACACTAGATTTAAGGCTACTGTATTCCTAGGGCCTAGATTTGAACCCAAGANCACTGGTTAAACTAAGAGAGAGACTCGTACCATCTCACCCAAGTCCTCGATAGTTGTGGGAAAAAGCTTTGATTGTTGTTATTTTGAGTCTAGGGGAAAGGGAATAGTGATCACCTATATGCTAGTTTGAAGATGTCAGACTACANTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00571	105230	114521	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function
GO:0022857 transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000571s00026041.1	PF00892.15	EamA	428	555	2.40E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.332
SRR1783600	control	4.382
SRR1783602	moderate drought stress	5.681
SRR1811619	moderate drought stress	5.792

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.777
DRR006520	Root Summer glycyrrhizin high producing strain	5.664
DRR006521	Root Winter glycyrrhizin high producing strain	28.695
DRR006522	Root Winter glycyrrhizin high producing strain	27.896
DRR006523	Root Summer glycyrrhizin low producing strain	10.846
DRR006524	Root Summer glycyrrhizin low producing strain	10.640
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.845
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.819

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.344
SRR2868004	Drought Stress (root)	21.207
SRR2967015	Control (root)	17.624

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.494
SRR9715740	Leaf	10.076
SRR9715741	Leaf	31.109
SRR9715739	Root	5.798
SRR9715742	Root	11.729
SRR9715743	Root	9.437

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	35.771
SRR8749028	MeJA induced 9h	36.837
SRR8749029	MeJA induced 9h	37.021
SRR8749030	Uninduced	108.574
SRR8749031	Uninduced	57.197
SRR8749032	Uninduced	78.342

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.007
SRR8400027	Control - Root	15.113