Gene detail information of Glyur000571s00026035 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G42240.1 | 0 | serine carboxypeptidase-like 42 |
| NR | KHN23425.1 | 0 | Serine carboxypeptidase-like 42 [Glycine soja] |
| COG | YP_002430787.1 | 5.00E-20 | peptidase S10 serine carboxypeptidase [Desulfatibacillum alkenivorans AK-01] |
| Swissprot | tr|Q9FH05|SCP42_ARATH | 0 | Serine carboxypeptidase-like 42 (Precursor) |
| trEMBL | tr|K7KM24|K7KM24_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G41970.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00571 | 42830 | 50397 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000571s00026035.1 | PF00450.17 | Peptidase_S10 | 35 | 427 | 9.00E-118 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.218 |
| SRR1783600 | control | 10.284 |
| SRR1783602 | moderate drought stress | 10.221 |
| SRR1811619 | moderate drought stress | 9.742 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.156 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.159 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.397 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.247 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.068 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.509 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 90.369 |
| SRR2868004 | Drought Stress (root) | 99.986 |
| SRR2967015 | Control (root) | 102.964 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 50.061 |
| SRR9715740 | Leaf | 34.019 |
| SRR9715741 | Leaf | 69.190 |
| SRR9715739 | Root | 10.480 |
| SRR9715742 | Root | 19.262 |
| SRR9715743 | Root | 17.805 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 30.006 |
| SRR8749028 | MeJA induced 9h | 42.598 |
| SRR8749029 | MeJA induced 9h | 19.339 |
| SRR8749030 | Uninduced | 29.574 |
| SRR8749031 | Uninduced | 8.605 |
| SRR8749032 | Uninduced | 13.624 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 79.419 |
| SRR8400027 | Control - Root | 65.900 |