Gene detail information of Glyur000571s00026032 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G48880.1 | 2.00E-133 | TRICHOME BIREFRINGENCE-LIKE 7 |
| NR | XP_007137530.1 | 0 | hypothetical protein PHAVU_009G134800g [Phaseolus vulgaris] |
| Swissprot | tr|F4I037|TBL7_ARATH | 2.00E-163 | Protein trichome berefringence-like 7 |
| trEMBL | tr|V7AV99|V7AV99_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW09524.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00571 | 22414 | 27306 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000571s00026032.1 | PF14416.1 | PMR5N | 121 | 173 | 9.50E-23 |
| Glyur000571s00026032.1 | PF13839.1 | PC-Esterase | 174 | 448 | 1.30E-62 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.660 |
| SRR1783600 | control | 1.701 |
| SRR1783602 | moderate drought stress | 1.429 |
| SRR1811619 | moderate drought stress | 1.385 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.926 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.897 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.151 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.148 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.743 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.772 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.040 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.868 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.756 |
| SRR2868004 | Drought Stress (root) | 6.973 |
| SRR2967015 | Control (root) | 5.549 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.286 |
| SRR9715740 | Leaf | 0.703 |
| SRR9715741 | Leaf | 0.899 |
| SRR9715739 | Root | 1.090 |
| SRR9715742 | Root | 1.714 |
| SRR9715743 | Root | 1.248 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.396 |
| SRR8749028 | MeJA induced 9h | 1.391 |
| SRR8749029 | MeJA induced 9h | 2.262 |
| SRR8749030 | Uninduced | 0.086 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.077 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.233 |
| SRR8400027 | Control - Root | 6.088 |