Gene detail information of Glyur000570s00022985 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G39150.1 | 7.00E-70 | RmlC-like cupins superfamily protein |
| NR | XP_003618167.1 | 3.84E-136 | Germin-like protein [Medicago truncatula] |
| Swissprot | tr|Q9FIC6|GL117_ARATH | 8.00E-91 | Germin-like protein subfamily 1 member 17 (Precursor) |
| trEMBL | tr|G7KQ20|G7KQ20_MEDTR | 1.00E-136 | Germin family protein {ECO:0000313|EMBL:AES74385.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00570 | 130478 | 131615 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000570s00022985.1 | PF00190.17 | Cupin_1 | 66 | 207 | 2.00E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.210 |
| SRR1783600 | control | 1.546 |
| SRR1783602 | moderate drought stress | 0.473 |
| SRR1811619 | moderate drought stress | 0.472 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.300 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.208 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.072 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.150 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.300 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.992 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 28.742 |
| SRR2868004 | Drought Stress (root) | 91.118 |
| SRR2967015 | Control (root) | 31.937 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.694 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.634 |
| SRR9715739 | Root | 3.820 |
| SRR9715742 | Root | 11.174 |
| SRR9715743 | Root | 9.638 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.181 |
| SRR8749028 | MeJA induced 9h | 45.053 |
| SRR8749029 | MeJA induced 9h | 12.102 |
| SRR8749030 | Uninduced | 129.682 |
| SRR8749031 | Uninduced | 24.552 |
| SRR8749032 | Uninduced | 8.400 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 181.791 |
| SRR8400027 | Control - Root | 158.373 |