Gene detail information of Glyur000570s00022984 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G38940.1 | 1.00E-63 | RmlC-like cupins superfamily protein |
| NR | XP_004489241.1 | 3.45E-116 | PREDICTED: putative germin-like protein 2-1-like [Cicer arietinum] |
| Swissprot | tr|Q6K5Q0|GL21_ORYSJ | 4.00E-82 | Putative germin-like protein 2-1 (Precursor) |
| trEMBL | tr|G7KQ15|G7KQ15_MEDTR | 3.00E-115 | Uncharacterized protein {ECO:0000313|EMBL:AFK39197.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00570 | 128207 | 131697 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000570s00022984.1 | PF00190.17 | Cupin_1 | 151 | 292 | 5.00E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.900 |
| SRR1783600 | control | 0.936 |
| SRR1783602 | moderate drought stress | 0.372 |
| SRR1811619 | moderate drought stress | 0.371 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.118 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.162 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.056 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.394 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.451 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.478 |
| SRR2868004 | Drought Stress (root) | 36.577 |
| SRR2967015 | Control (root) | 16.209 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.008 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.404 |
| SRR9715739 | Root | 0.363 |
| SRR9715742 | Root | 2.695 |
| SRR9715743 | Root | 2.387 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.219 |
| SRR8749028 | MeJA induced 9h | 39.052 |
| SRR8749029 | MeJA induced 9h | 10.594 |
| SRR8749030 | Uninduced | 125.256 |
| SRR8749031 | Uninduced | 32.756 |
| SRR8749032 | Uninduced | 13.544 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 37.146 |
| SRR8400027 | Control - Root | 31.883 |