Gene detail

Gene detail information of Glyur000570s00022965

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G35710.1	0	Protein kinase family protein with leucine-rich repeat domain
NR	XP_003624321.1	0	Receptor protein kinase-like protein [Medicago truncatula]
COG	YP_004775215.1	8.00E-61	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9LP24\|Y1571_ARATH	0	Probable leucine-rich repeat receptor-like protein kinase At1g35710 (Precursor)
trEMBL	tr\|G7KU89\|G7KU89_MEDTR	0	LRR receptor-like kinase {ECO:0000313\|EMBL:AES80539.1}

Sequence

Transcript Sequence

>Glyur000570s00022965.1
GCTGGTTTTTCCAAAACCGCTTCTTTGAGTTTGACCCATGCTGCCACAATTACTACTGTTTATGATCAAGCTGCAGCTGAAGACAGGGAAGCAAATGCTCTGTTGAAATGGAAACACAGCCTTGACAATCACAGCCAAGCTCTCTTGTCAACTTGGACAGGTTCTAGTCCATGCAAATGGCAAGGAATTCAGTGTGACAAATCCAAGTCCGTCTCCAGCATAAACCTTGCAAATTATGGACTAAAAGGCACACTCCACAATCTCAGCTTCTCCTCATTCCCCAACCTCTTCAGCATAGATATCTACAACAACCACTTTTATGGGACCATTCCCCCACAAATTGGCAACATGTCCAAAGTAAATGTTTTGAACTTTTCTTTAAATTCTTTTGATGGTTCCATCCCAAAAGAAATGTGGACATTGAGGAGTTTACATGGCCTTGATCTCTCCTTGTGTCTTCAACTAAATGGAGAGATTCCTAGTTCCATAGGAAACTTGTCTAACCTATCATATCTGGATTTAGGTGGCAACAAAATTTCTGGCCACATTCCTCCAGAGATTGGGAAATTGAGCAACTTGGGGTATCTAGCTATTGCTGTTAATGAACTTTCGGGTTCCATTCCTCAAGAAATTGGAATGTTAGCAAACCTTCGTGTTATTGATTTGTCACGGAACTCTCTACGCGGTACTATCCCAAGTACAATAGGTAACATGAGCAACTTAAATGAACTTTACCTTTCTAATAACACCCGGTTGTCTGGACCAATCCCTCCCTCCTTGTGGAACATGTCTAACTTGTCCTTGCTCTACCTTGATAACAATGATTTTTCTGGATCAATCCCTGCTTCCATAGAAAACTTGGCCAATTTGAATGAACTTTTTCTTGCTAACAACCAACTTTCTGGACCTATTCCTTCCACCATTGGGAACTTGACAAAGCTCAGCCGGTTGTACTTGGGCGTCAATTATTTTTCTGGATCAATTCCTCCCTCCATAGGAAATCTAATCAAATTGGAAGGCCACAGTCTCCGAGGAAACAATCTCTCTGGATATATTCCTGTCACAATTGGAAATTTGACAACGCTCACAGTCTTGGAATTATCCACTAACAATTTTTCTGGAACAATCCCTGCTTCAATAGAAAACTTGGCCAATTTGATTACACTCTTACTTCATGACCAACCACCTTTCTGGATCTATTCCTCCAACCATTGGGAACTTTACAAATCTCAGGTGGTTGCTCTTGCGCTCCAATTGTTTCTCTGGATCAATTCCTGCCTCCATAGGAATCTTCATGAAAACAGTCTCTCTGGATCTATTCCTGTCGAAATTGGAAATTTGACAAGGCTCACAAACCTGCTATTGTCCGCTAACAAACTTAGTGGTAGCATTCCACAGGTCCTGAATAACATTACAACCTGGAATTTCTTGTTATTATCCGAGAATGATTTCATTGGCTATATACCTCCTCAAATATGCTCTGGCGGGTCACTAGGATACTTCAATGCTGAGCACAACCATTTCACTGGCCCAGTACCACCAATCTTGAAAAACTGCTCTAGTATTGTAAATCAAATAGGAGGAGATATAGCACAAGATTTTGGTGTATATCCAAATTTGGTAGACATTAATCTGAGTCACAATAAATTTTATGGCCACATTTCACCAAACTGGGGGAAGTGTCCTAATCTTGATAGCTTCATAATATCCAACAACAATATTTCCGGCAGTGTACCAGTGGAACTTGTTGCGGCAACCAAGCTAGGCAGGCTTCACCTTTCTTCGAATCACCTGATTGGGAAGCTTCCAAAGGGACTAGGAAACATGAAATCATCAATTGAAGTTAAGATTAGCAACAATCATCTTTCGGGAACTGAAATTGGATCATTACAGAAGCTTGAAGAGCTGGATATGGGAGGAAACATGTTGAGTGGCACAATACCAAAACAAGTTGTGATGTTACCCATCTTACGAAACTTGAATTTGAGTAAAAACAAATTCGAGGGAAGCATTCCCTTGGAGTTGGGCCAATCACAACTTCTTGAATCTCTTGACCTTAGCTGGAATTTGTTGATTGGAACAGTACCAACAGTGCTTGGAGAGTCGAGGCAATTGCAATGGTTGAATCTGTCATGCAATAATATCTCAGGCACCATTCCATCCAGTTTTGATGACGGCAATCGCATGTCAAGCTTGACTTTTGTCAACATATCATACAACCAGCTAGAAGGGAGGCTTCCAAATAATAAAGCCTTTCTTAACGCTTCAATTGAATCTAACAAAGGCTTGTGTGGTAATCACACTGGCTTAGTGCTTTGCCCAACCAACCAAGGTCAGAAGAGCCGCAAGGTCATCCTACTAGTATTGTTTGTCATCTTAGGTGCTCTACTACTAGTTTTTTGTGGGGTGGGAGCTTCAATATATATTCTTTGCCGGCGAGCAAGAAAGAAAGAAAGTGAGGATAAAGATTCTAAAGAAGGACAATCAGAAGAAGTCTTTTCCATATGGAGTCACGATGGAAAAATGGTGTTTGAAAATATCATTGAAGCTACCAATAATTTTGATGACAAATATCTCATTGGAGTGGGAGGGGAAGGATCTGTTTACAGGGCCAAGTTAGCTTCAGGTCTGGTTGTTGCAGTGAAGAAACTTCATTTGGGAACAGATGGAGAGAGGCCCAATTTCAAAGCTTTTGAAAATGAAATTCAAGCTTTGATAGAAATCAAGCATCGTAACATTATAAAGCTCGATGGATTTTGCTCACACTCGCGATTCTCATTTCTTGTTTACAAGTTCTTGGAAGGGGGAAATTTGGCTCAAATGCTCAACAATGACACAGCAGCAATTGAGTTTGATTGGGAAAGGAGGGTGAATGTTGTTAAAGGTGTGGCCAATGCTTTGTCCTATACGCATCATGACTGCTTACCTCCAATAGTTCATCGCGACATATCAAGCAAGAATATTCTTTTGGATTTAGAATATGAAGCTCATCTTTCTGATTTTGGAACTGCCAAGTTTCTGAAGCCCGATTCACACACTTGGACCGCATTTGCAGGCACCTATGGGTACGCAGCTCCAGAGCTTGCCCAGACCATGCAAGTGAACGAGAAATGTGATGTTTTCAGCTTTGGAGTACTTTGTTTTGAAATCCTAATGGGAAAGCATCCAGGAGATCTCGTTTCTTCACTGTTATCACCANCTACCGCAAAGATGACTTATAACTTGCTGTTGGTTGATGTGTTAGACCAACGCCCTCCTCCACCCAACAATTCAATTGCTGGGGATGTCATCTTGATTGCAAGGTTGGCATTGTCTTGCTTGAGTGAAAGTCCATCTTCTCGCCCAACCATGGATCAAGTATCTAAAGAACTTTTTATGAGAAAATCACCTTTAGCAGACCAGTTCCCCCTCATCAAACTTGGACAACTCCACTAGCAGATTGAACTACTTAAGTATGTTGTTTCTTTGCATGTCTTCGATCATATTATGTTAAGCTTTTTCTTCTTGGTGATTGTAACTATATATGATTGGGATAAGGCTTGGTTATTGTTGTTGTTGTAACTGTATATGCCATGTGTACAAGTTAGCAGTTCACTTTT

Protein Sequence

>Glyur000570s00022965.1
AGFSKTASLSLTHAATITTVYDQAAAEDREANALLKWKHSLDNHSQALLSTWTGSSPCKWQGIQCDKSKSVSSINLANYGLKGTLHNLSFSSFPNLFSIDIYNNHFYGTIPPQIGNMSKVNVLNFSLNSFDGSIPKEMWTLRSLHGLDLSLCLQLNGEIPSSIGNLSNLSYLDLGGNKISGHIPPEIGKLSNLGYLAIAVNELSGSIPQEIGMLANLRVIDLSRNSLRGTIPSTIGNMSNLNELYLSNNTRLSGPIPPSLWNMSNLSLLYLDNNDFSGSIPASIENLANLNELFLANNQLSGPIPSTIGNLTKLSRLYLGVNYFSGSIPPSIGNLIKLEGHSLRGNNLSGYIPVTIGNLTTLTVLELSTNNFSGTIPASIENLANLITLLLHDQPPFWIYSSNHWELYKSQVVALALQLFLWINSCLHRNLHENSLSGSIPVEIGNLTRLTNLLLSANKLSGSIPQVLNNITTWNFLLLSENDFIGYIPPQICSGGSLGYFNAEHNHFTGPVPPILKNCSSIVNQIGGDIAQDFGVYPNLVDINLSHNKFYGHISPNWGKCPNLDSFIISNNNISGSVPVELVAATKLGRLHLSSNHLIGKLPKGLGNMKSSIEVKISNNHLSGTEIGSLQKLEELDMGGNMLSGTIPKQVVMLPILRNLNLSKNKFEGSIPLELGQSQLLESLDLSWNLLIGTVPTVLGESRQLQWLNLSCNNISGTIPSSFDDGNRMSSLTFVNISYNQLEGRLPNNKAFLNASIESNKGLCGNHTGLVLCPTNQGQKSRKVILLVLFVILGALLLVFCGVGASIYILCRRARKKESEDKDSKEGQSEEVFSIWSHDGKMVFENIIEATNNFDDKYLIGVGGEGSVYRAKLASGLVVAVKKLHLGTDGERPNFKAFENEIQALIEIKHRNIIKLDGFCSHSRFSFLVYKFLEGGNLAQMLNNDTAAIEFDWERRVNVVKGVANALSYTHHDCLPPIVHRDISSKNILLDLEYEAHLSDFGTAKFLKPDSHTWTAFAGTYGYAAPELAQTMQVNEKCDVFSFGVLCFEILMGKHPGDLVSSLLSPXTAKMTYNLLLVDVLDQRPPPPNNSIAGDVILIARLALSCLSESPSSRPTMDQVSKELFMRKSPLADQFPLIKLGQLH

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00570	1821	5656	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000570s00022965.1	PF08263.7	LRRNT_2	29	66	2.40E-07
Glyur000570s00022965.1	PF00560.28	LRR_1	168	190	0.039
Glyur000570s00022965.1	PF13855.1	LRR_8	216	275	8.30E-09
Glyur000570s00022965.1	PF00560.28	LRR_1	704	723	0.027
Glyur000570s00022965.1	PF00069.20	Pkinase	859	1125	1.60E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.041
SRR1783600	control	9.083
SRR1783602	moderate drought stress	6.818
SRR1811619	moderate drought stress	7.059

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.744
DRR006520	Root Summer glycyrrhizin high producing strain	1.548
DRR006521	Root Winter glycyrrhizin high producing strain	0.031
DRR006522	Root Winter glycyrrhizin high producing strain	0.030
DRR006523	Root Summer glycyrrhizin low producing strain	3.288
DRR006524	Root Summer glycyrrhizin low producing strain	3.839
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.775
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.776

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.332
SRR2868004	Drought Stress (root)	8.604
SRR2967015	Control (root)	9.300

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.359
SRR9715740	Leaf	1.739
SRR9715741	Leaf	1.048
SRR9715739	Root	2.313
SRR9715742	Root	3.502
SRR9715743	Root	2.615

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.016
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.033
SRR8749030	Uninduced	0.002
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.141
SRR8400027	Control - Root	5.173