Gene detail

Gene detail information of Glyur000569s00020993

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G04820.1	4.00E-141	Pseudouridine synthase family protein
NR	AES82636.2	0	tRNA pseudouridine synthase [Medicago truncatula]
COG	YP_001030241.1	2.00E-17	hypothetical protein Mlab_0803 [Methanocorpusculum labreanum Z]
trEMBL	tr\|G7L1T8\|G7L1T8_MEDTR	0	tRNA pseudouridine synthase {ECO:0000313\|EMBL:AES82636.2}

Sequence

Transcript Sequence

>Glyur000569s00020993.1
CTGGTTCTTCCCGCTCTACTTGCTGCTCCAAACTAAAACCCTAGTTGTTGTTGTTGTTGTTGTGTAAAACGGTGATGGCAATGAAAACCATGGAAGAAAAAGATGTGGGCATTTCCTGCTACATTTCCAACCTCCCTGGCTTCCGTGGAATTTTAAAACAAAGGTATTCTGATTTTATTGTACATGAAGTAGACAGAGATGGACAAGTTGTTCAGTTGTCCTCACTTGATGCNCCTGCAGAGTATTTGACTTTCTGTGGCTTGTTTCAGAGTGTTCAGGAAAATGGAACAAACACATCTGACACTACAACTATAACTTATGCCTCTCAAATTGAATCCTTTAAGTCNCTCGCCGGGGATTCTGATGCGACCTGTTTGGAAGAATTTATCAATCAAATTAATGCTGGTGGTGAAGACGGTGTTTCTCCCGTTCTTCTTTCTCCAGATTCTGATAAATCTCATCGAAAGGCAATGCATAATTTCTTAAAGGAAAACTTCAAGTTCCTGGTGTCCGACACAGTCGATGGACCAGATGCTTCATCAAAATGCATCCGTGTGAGATTGAATTCTGGTGAACCTAACAAGAAGGGCAAAAACTCCAAGAAACGCAAAGAAAGAGACGATAAGCCTTTTGACAGCAGAGGTTCAGAAAATTGGCCAGAAAATGTTGGCAAATTCCTCAGGTTTCATCTTTATAAGGAAAACAAAGATACCCAGGAAGCTTTGGGGGTGATTGGAAACATGCTTGGCATCCAGTCAAGGTCATTTGGATTCGCGGGTACAAAGGACAAACGTGCTGTCTCGACCCAAAAGGTTACTGTTTATAAGCAGCAAGCAAGTAGGCTAGCTTCCCTTAATGAGAAGTTGTTTGGTATTAAAGTGGGTGATTTCAGTTATGTTGAAGAAGGACTTTGCCTTGGTCAGCTCTTGGGGAATAGATTTACAATCACATTGCGAAATGCAATAGCCAAAGCACGCAAGTACTATAAAGATAGTAATGATGTTGTTGGGACACTTAAGCAGTTGCCTCGATACTTGGTTGCTGAAAGGGCTGTGCTGCAAGGTTTAAAAAAATCTCCTGGAAACTACTTGCAGGCTTTGAAATCTATTCCACGGACTTTAAGAATGATGTATGTACATAGTTATCAAAGCTATTTGTGGAACCATGCAGCAAGAACTGATCAAGTAGTATTAGGAGACTTGGTATATTGTAAAGAAAATCCTTCTGGAAAAGTTACAGGGCTTGTTGTATCCGAGTTTGAAGATGATTGTGGTGATAGGTATGATTCTAGTAACGAAGATGAAGTCTCTGGAGATATTCATGAAGAAAGAATTAGTTATGGGATCAAGGTTGTGGATGCTGAAGATCTTAATTCAAGATGTTATACAATTGATGATGTCATCCTTCCTTTGCCAGGGGAATTACTTACATATACTGATAGTAATAAACCATTGGTAGAGACAGATTTAGACAAAATTAGGAAGTCTAAACCTATAAACAATGTCAAACCAGTGGGTGCACCAGATGGGGAAAAGGAAGAAGCCACTGATTGCATGAGGCAATTAGAGAGTTCCGATGACGTGGCAAAGGTTGAGACTGATCATAGTGAGATTGCAGGCGAGGAAGTAATAGTACCACGTGATGAATCTGTCGGTGATTCTGGCTCCCAAGATTCCCACACTGCTCTCAAATTGAGCTTTACTCTTCCTTCTTCGAGTTATGCAACAATGGCAATAAGAGAGCTGCTGAAGACTTCAACATCTGTTGCATATCACAAGACATTAAACCAGTAGTAATCACGTGGCAACCAATTTAGCAATGTTTTCTGCAGGAGAAAGTGGATAGAATAGAATTATAGAACAGAGAGAAAGAGAAGTTTCATCTCAGATGTTACTGAATTCTCAGTGGATGTTACATATGAATCTTGTCGGAAGAAATAGAGCGATATCCTCTCACGGGTACTCTTTATTTTTTGCNGGAGCGCAGTGAATTTTAACACTGCGATATTTCCGCTGAAAATTATAGTTGAATACTTGCAAGTGCTGTTAGTATTCGTTTTTGTATAAGATTTCCGTGTGTTGGATTTTAGTACGTTGTGCACGCTCTCCTGTTTCTCCTGTCTTTAATTTCCCGTCGTAATATTTTTAGCTGTAACATCCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00569	121624	130243	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0001522 pseudouridine synthesis

GO:0009451 RNA modification

molecular_function

GO:0003723 RNA binding

GO:0009982 pseudouridine synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000569s00020993.1	PF01142.13	TruD	195	298	4.50E-22
Glyur000569s00020993.1	PF01142.13	TruD	324	379	3.90E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.683
SRR1783600	control	4.827
SRR1783602	moderate drought stress	5.644
SRR1811619	moderate drought stress	5.493

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.030
DRR006520	Root Summer glycyrrhizin high producing strain	8.339
DRR006521	Root Winter glycyrrhizin high producing strain	11.644
DRR006522	Root Winter glycyrrhizin high producing strain	11.707
DRR006523	Root Summer glycyrrhizin low producing strain	10.128
DRR006524	Root Summer glycyrrhizin low producing strain	10.213
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.166
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.062

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.299
SRR2868004	Drought Stress (root)	13.933
SRR2967015	Control (root)	12.469

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.515
SRR9715740	Leaf	5.309
SRR9715741	Leaf	7.144
SRR9715739	Root	1.296
SRR9715742	Root	4.521
SRR9715743	Root	3.868

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.597
SRR8749028	MeJA induced 9h	17.778
SRR8749029	MeJA induced 9h	14.828
SRR8749030	Uninduced	6.544
SRR8749031	Uninduced	3.662
SRR8749032	Uninduced	4.460

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.199
SRR8400027	Control - Root	10.568