Gene detail information of Glyur000569s00020988 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G79590.2 | 3.00E-04 | syntaxin of plants 52 |
| NR | XP_007030625.1 | 2.20E-52 | Syntaxin of plants 52, putative isoform 2 [Theobroma cacao] |
| trEMBL | tr|A0A061F374|A0A061F374_THECC | 8.00E-53 | Syntaxin of plants 52, putative isoform 2 {ECO:0000313|EMBL:EOY11127.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00569 | 104741 | 106910 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.769 |
| SRR1783600 | control | 6.789 |
| SRR1783602 | moderate drought stress | 12.530 |
| SRR1811619 | moderate drought stress | 12.652 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.632 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.427 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 26.688 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 25.401 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.715 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.731 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 35.501 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 35.726 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.459 |
| SRR2868004 | Drought Stress (root) | 0.419 |
| SRR2967015 | Control (root) | 0.531 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.317 |
| SRR9715740 | Leaf | 17.914 |
| SRR9715741 | Leaf | 14.804 |
| SRR9715739 | Root | 1.030 |
| SRR9715742 | Root | 0.385 |
| SRR9715743 | Root | 0.524 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.208 |
| SRR8749028 | MeJA induced 9h | 0.394 |
| SRR8749029 | MeJA induced 9h | 0.884 |
| SRR8749030 | Uninduced | 0.516 |
| SRR8749031 | Uninduced | 0.358 |
| SRR8749032 | Uninduced | 0.186 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.040 |
| SRR8400027 | Control - Root | 2.416 |