Gene detail

Gene detail information of Glyur000569s00020980

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G28060.1	3.00E-62	Ribosomal protein S24e family protein
NR	NP_001240176.1	9.10E-91	uncharacterized protein LOC100802918 [Glycine max]
COG	YP_184109.1	7.00E-13	30S ribosomal protein S24e [Thermococcus kodakarensis KOD1]
Swissprot	tr\|Q8LC83\|RS242_ARATH	4.00E-83	40S ribosomal protein S24-2
trEMBL	tr\|C6TAW2\|C6TAW2_SOYBN	3.00E-91	40S ribosomal protein S24 {ECO:0000256\|RuleBase:RU004383}

Sequence

Transcript Sequence

>Glyur000569s00020980.1
AAATAAATAAAAGGATTAGGGTTTCTTTATACGTCTTTCCCGTGTGTTGTGTTTGGTGTTGTGGAAGCTGCCCCATCCNTCTTCGCTACTCTCTCGTCACTCACATCACTGAAAGGCAAGCATGGCGGAAAAGGCGGTTACCATCCGAACTAGAAAGTTCATGACAAACAGGCTTCTCTCCAGAAAGCAATTCATCATTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAGGCTGAGCTTAAGGAAAAGCTNGCAAGGATGTATGAAGTGAAGGACCCTAACACTGTGTTTGTCTTCAAATTCCGAACACATTTTGGAGGTGGCAAATCCACTGGTTTTGGCTTGATTTATGATTCAGTTGAGAATGCAAAGAAGTATGAGCCAAAGTACAGGCTTATCAGGAACGGTCTTGACACCAAGGTAGAAAAGTCAAGGAAACAGATGAAGGAGAGAAAGAATAGAGCCAAGAAGATTCGTGGAGTAAANAAGACTAAGGCTTCTGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTGAGACATACTGTTTGGGTTTTAAGGTTATTTTGCTTTCAGAGTTTTCTAATAGCTATTTTATCTCATGCCAGTTCTCTAGAATGAGATATTTTGGGACAAGTGTTCATCCTTGTTTTATTTATGTTCGATTATAACTCGAGATTTTGAGTACTAGCATTGACCAATATTGAGAACTTTTTTGTTTACTTTCCTTTGCCTTTAAATATTTAGTAGATTGGAGGTAGTGAAGTACTATGCTGTATGGCGGCCTCGTTGCTTGATTTACATGGAATTTAATCCGGGTTTAGATGTCAGAATGCCATGAAAGGGCTCTGTTAATGATGCTTTTACTCGGATCATGATTATTGTTACGAGAAAAATACGCNCGTTTGAGCATAACATGATTACGTAACTTTAGGTGATAAGGAATATTGAATCCCCACACTTTGTCCGATTCTTCCGGACGAACTCTAGTTGTACTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00569	63630	65781	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function

GO:0000166 nucleotide binding

GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000569s00020980.1	PF01282.14	Ribosomal_S24e	24	106	7.70E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	66.340
SRR1783600	control	66.569
SRR1783602	moderate drought stress	48.104
SRR1811619	moderate drought stress	48.377

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	259.566
DRR006520	Root Summer glycyrrhizin high producing strain	255.879
DRR006521	Root Winter glycyrrhizin high producing strain	154.009
DRR006522	Root Winter glycyrrhizin high producing strain	150.217
DRR006523	Root Summer glycyrrhizin low producing strain	181.784
DRR006524	Root Summer glycyrrhizin low producing strain	181.781
DRR006525	Leaf Summer glycyrrhizin high producing strain	59.446
DRR006526	Leaf Summer glycyrrhizin high producing strain	58.932

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	294.832
SRR2868004	Drought Stress (root)	155.148
SRR2967015	Control (root)	143.074

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	84.844
SRR9715740	Leaf	89.497
SRR9715741	Leaf	70.158
SRR9715739	Root	54.705
SRR9715742	Root	83.805
SRR9715743	Root	77.095

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	295.976
SRR8749028	MeJA induced 9h	94.074
SRR8749029	MeJA induced 9h	167.786
SRR8749030	Uninduced	23.290
SRR8749031	Uninduced	10.708
SRR8749032	Uninduced	25.655

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	197.905
SRR8400027	Control - Root	172.081