Gene detail

Gene detail information of Glyur000569s00020979

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G28050.2	8.00E-79	Cytidine/deoxycytidylate deaminase family protein
NR	XP_007144808.1	8.22E-125	hypothetical protein PHAVU_007G185600g [Phaseolus vulgaris]
COG	YP_004166599.1	1.00E-39	guanine deaminase [Cellulophaga algicola DSM 14237]
Swissprot	tr\|Q9S7I0\|TADA_ARATH	6.00E-16	tRNA(adenine(34)) deaminase, chloroplastic (Precursor)
trEMBL	tr\|V7BG60\|V7BG60_PHAVU	3.00E-125	Uncharacterized protein {ECO:0000313\|EMBL:ESW16802.1}

Sequence

Transcript Sequence

>Glyur000569s00020979.1
CTCGCGCTCACGTTCCGACGAATTGCGATAACTCGACACAACACAAGTGAGTTGTGGGTGGGTGTGGGTGTGACAACGGGACATCCGATCCGTGTCTTCTTTTCCCTTGCTGCTTCCGTGTTTATTTCATTTTGTTTCTGCGTCATTATTCTCCGTTCCTGCGAATACCCCTAATCGAGACAGTGTTCATGGAGGATGCCACACCCGCTGCTGTTACTGCCAACGTNTTGGAAGCTAAAGATGGAACAATTTCAGTGGCTTCTGCATTTGCTGGTCACCAACAAGCTGTACAGGATAGAGACCACAGATTCCTGACAAAAGCGGTCGAAGAAGCATATAAAGGGGTTGAATGCGGTGATGGTGGCCCATTTGGTGCTGTTGTTGTTCGAAATGATGAAGTAGTTGTGAGCTGTCATAACATGGTTTTAAGAAACACTGATCCCACTGCTCATGCTGAGGTTACTGCTATAAGACAGGCTTGTCAAAAGCTAAATCAAATTGAGCTCTCTGACTGTGAAATCTATGCATCTTGTGAGCCTTGTCCAATGTGCTTTGGTGCAATTCATCTTTCAAGAATTAAGAGATTGGTTTATGGAGCTAAAGCAGAAGCTGCAATAGCAATTGGATTTGATGATTTTATTGCCGATGCACTGAGGGGCACTAGCTTTTATCAAAAGGCCCACATGGAGATTAAAAAGGCCGATGGTACTGGTGCTGTGATTGCAGAACAAGTATTTGAGAAAACGAAAGCCAAGTTTCCTCTGTACTGATTGCTTCAATCCTTATATTAACAATGAAAACGGGTCACAAAATTGGTCATGAATTGAANAAATATAGAATTTGCAGATTGCTTAGAACCTTGAGTCTTCTAATGTAAACCTTTATGAGTGCAATCTTTTGATGGCATGCTTGTGATGTCTTCTGATGGTCCAAAGCAATTTTTTGAAAGCTGACTTTTACTTTCTATTGCTTTAATATATATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00569	59451	62573	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0008270 zinc ion binding

GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000569s00020979.1	PF00383.17	dCMP_cyt_deam_1	37	136	8.90E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.397
SRR1783600	control	5.427
SRR1783602	moderate drought stress	5.205
SRR1811619	moderate drought stress	4.907

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.081
DRR006520	Root Summer glycyrrhizin high producing strain	7.488
DRR006521	Root Winter glycyrrhizin high producing strain	2.848
DRR006522	Root Winter glycyrrhizin high producing strain	2.689
DRR006523	Root Summer glycyrrhizin low producing strain	10.073
DRR006524	Root Summer glycyrrhizin low producing strain	10.645
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.554
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.826

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.072
SRR2868004	Drought Stress (root)	15.703
SRR2967015	Control (root)	12.706

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.069
SRR9715740	Leaf	9.443
SRR9715741	Leaf	7.191
SRR9715739	Root	2.469
SRR9715742	Root	2.233
SRR9715743	Root	2.661

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	27.527
SRR8749028	MeJA induced 9h	13.123
SRR8749029	MeJA induced 9h	19.898
SRR8749030	Uninduced	8.901
SRR8749031	Uninduced	5.018
SRR8749032	Uninduced	5.072

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.387
SRR8400027	Control - Root	11.949