Gene detail information of Glyur000569s00020977 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G54500.1 | 2.00E-47 | Rubredoxin-like superfamily protein |
| NR | AFK34502.1 | 8.36E-86 | unknown [Lotus japonicus] |
| COG | YP_007119420.1 | 3.00E-27 | rubredoxin [Microcoleus sp. PCC 7113] |
| trEMBL | tr|I3SKV2|I3SKV2_LOTJA | 3.00E-86 | Uncharacterized protein {ECO:0000313|EMBL:AFK40894.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00569 | 52142 | 52678 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000569s00020977.1 | PF00301.15 | Rubredoxin | 83 | 128 | 1.00E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.557 |
| SRR1783600 | control | 8.986 |
| SRR1783602 | moderate drought stress | 6.513 |
| SRR1811619 | moderate drought stress | 6.767 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.860 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.178 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.416 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.638 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.533 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.749 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 336.626 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 331.641 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.275 |
| SRR2868004 | Drought Stress (root) | 7.846 |
| SRR2967015 | Control (root) | 8.046 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 196.829 |
| SRR9715740 | Leaf | 298.290 |
| SRR9715741 | Leaf | 143.521 |
| SRR9715739 | Root | 5.899 |
| SRR9715742 | Root | 4.792 |
| SRR9715743 | Root | 3.236 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.831 |
| SRR8749028 | MeJA induced 9h | 4.188 |
| SRR8749029 | MeJA induced 9h | 1.261 |
| SRR8749030 | Uninduced | 4.298 |
| SRR8749031 | Uninduced | 0.831 |
| SRR8749032 | Uninduced | 1.359 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.175 |
| SRR8400027 | Control - Root | 13.697 |