Gene detail information of Glyur000569s00020968 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G05100.1 | 8.00E-129 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| NR | XP_006382723.1 | 0 | hypothetical protein POPTR_0005s04780g [Populus trichocarpa] |
| COG | YP_004989037.1 | 2.00E-12 | methyltransferase family protein [Owenweeksia hongkongensis DSM 17368] |
| trEMBL | tr|B9MZK0|B9MZK0_POPTR | 0 | Uncharacterized protein {ECO:0000313|EMBL:ERP60520.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00569 | 1 | 2215 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000569s00020968.1 | PF13659.1 | Methyltransf_26 | 171 | 280 | 1.20E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.500 |
| SRR1783600 | control | 5.991 |
| SRR1783602 | moderate drought stress | 4.624 |
| SRR1811619 | moderate drought stress | 4.224 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.842 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.266 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.460 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.151 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.111 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.174 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.501 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.560 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.047 |
| SRR2868004 | Drought Stress (root) | 14.415 |
| SRR2967015 | Control (root) | 16.077 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.340 |
| SRR9715740 | Leaf | 2.903 |
| SRR9715741 | Leaf | 1.434 |
| SRR9715739 | Root | 4.221 |
| SRR9715742 | Root | 5.760 |
| SRR9715743 | Root | 4.239 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.201 |
| SRR8749028 | MeJA induced 9h | 8.195 |
| SRR8749029 | MeJA induced 9h | 5.799 |
| SRR8749030 | Uninduced | 4.236 |
| SRR8749031 | Uninduced | 2.535 |
| SRR8749032 | Uninduced | 2.404 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.346 |
| SRR8400027 | Control - Root | 7.850 |