Gene detail

Gene detail information of Glyur000568s00030990

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G65140.1	1.00E-140	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
NR	XP_007159639.1	0	hypothetical protein PHAVU_002G254600g [Phaseolus vulgaris]
COG	YP_003269585.1	6.00E-63	trehalose-phosphatase [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q5HZ05\|TPPJ_ARATH	0	Probable trehalose-phosphate phosphatase J
trEMBL	tr\|V7CQK2\|V7CQK2_PHAVU	0	Trehalose 6-phosphate phosphatase {ECO:0000256\|RuleBase:RU361117}

Sequence

Transcript Sequence

>Glyur000568s00030990.1
CTTTTTCTTAAACGTGGGTCCCACCAGTAAATTTTGGTTCTTTTGGACCTTCTTCTGGTTTCTAACTATAAATCAAAGCCAGGGGCTGTGTCTCTTCCCCCACACATACACTCTCTCTCTCTCTCTCTCTCGTGTTCGAGTTCGAGTTCGACTTCTCCCTTCCCTTTTCTTCTGCCTCTTCAACTCTCCCTCCTTTCTCTTTTGCATTTCATTGCAATCGCCGCATCTATCTCCGAGCGCCTCTTTTTAAGCTTGCTCGGCTTCATCTTCTCAATAAGCTCTGATCNATTCGCTCCCCTGTTTGGTCCTTTCTCTGCTATAAAAGCATATATTTTGCTTTACTATAGTTCTTCAGGAACCTTAAGTGAAGATGACGCAGCAGAATGTGTTGGTGTCTGAAGCGAAATCTGGAATCAACGGTGCTATTACCGTGGCGCAAAAGCCACCGGCGGCACCCGGTGGGTACATTCCGATTCCGAGGAGGAGGGTTTTGAAGAACCTTGAAATCAATGGGGGACAGAGAATCAATGCATGGATTGACTCCATGAGAGCCTCTTCCCCAACACATGCCAAATCCACTCCTTCCTTGGCCGAAGAACACAACTCTTGGATTCTTCGTCACCCATCAGCATTAGACATGTTTGAGCAAATCATAGATGCATCAAAGGGAAAACAAATCGTCATGTTCCTGGACTATGATGGTACCCTGTCACCTATAGTCGAGGACCCCGACCATGCTTTCATGTCCAATTCGATATTGGTTGCTAACAACACGTTCTGTTGTCACATATATCAGATGAGGAAAACCGTGAGGAAACTTGCAAGGTGTTTTCCTACCGCTATTGTTACCGGCAGATGCAGAGACAAGGTGTACAATTTTGTTCGCTTGGCTGAGCTATATTATGCTGGAAGCCATGGTATGGATATTCAAGGGCCAACCAGAGACTCCAAATACAACAAAGACAACAAAGCAGAGGCAGTTCTTTTTCAACCTGCCAGTGATTTTCTTCCCATGATTAATGAGGTGTACCAACAATTGGTTGAGAAAACGAAATCAACTCCTGGTGCCAGGGTGGAGAACAACAAGTTCTGCGTCTCTGTTCATTTTCGCTGTGTTGACGAAAAGAGATGGAGTGAACTGGCACAGCAAGTGAAATCAGTGTTAAAAGAATACCCGAAGCTTCGCCTTAGCCAAGGAAGAAAGGTACTAGAGATTCGTCCCTCAATTAAATGGGACAAAGGGAAGGCCCTGGAATTTTTGTTAGAGTCACTTGGATTTGCCAACTGTAACGATGTCTTTCCTGTATATATTGGTGATGATAAAACCGATGAAGATGCATTCAAGAAATTAAGAGACAGAGGACAAGGTTTAGGAATTCTTGTCTCTAAATTTCCAAAGGACACTAGTGCATCATACTCTTTACAAGAACCCAATGAGGCAAGTGATGGACTTCCTTCAACGTTTGGTGGAGTGGAAAAAAGTATCCCTGCGAACACGTTCCTGGGTGTAAATGAACAGAATGACAATATTGTACATCCCTACCAGCCATAAAAATATGAAGTTTGGCTAGGAAGGATATATAGGACCCTTTTTTTTCTATGTTTTGTTCAGAAATTAGAACAAAGAGCAAAATGTATGGGGGAAAAAAAAGAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGACAAAAGTGTCTTTCTGAGTTTGAATTGCTCGTCTACATTGATGTAATTAGCCAAGTAGTAGGTAGTACTGGGGGAGAGTCTATGTACCATCAGATGTAATTCTGAATGGATTAAAATCTGTTCTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00568	58136	61323	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01087	otsB	EC:3.1.3.12	Starch and sucrose metabolism	map00500

Gene Ontology

biological_process

GO:0005992 trehalose biosynthetic process

GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000568s00030990.1	PF02358.11	Trehalose_PPase	106	354	4.20E-71

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.001
SRR1783600	control	7.085
SRR1783602	moderate drought stress	7.118
SRR1811619	moderate drought stress	7.073

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	57.161
DRR006520	Root Summer glycyrrhizin high producing strain	56.362
DRR006521	Root Winter glycyrrhizin high producing strain	43.656
DRR006522	Root Winter glycyrrhizin high producing strain	42.760
DRR006523	Root Summer glycyrrhizin low producing strain	195.184
DRR006524	Root Summer glycyrrhizin low producing strain	193.929
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.048
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.758

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.009
SRR2868004	Drought Stress (root)	23.537
SRR2967015	Control (root)	25.239

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.566
SRR9715740	Leaf	8.116
SRR9715741	Leaf	17.512
SRR9715739	Root	2.938
SRR9715742	Root	20.246
SRR9715743	Root	16.031

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.795
SRR8749028	MeJA induced 9h	15.324
SRR8749029	MeJA induced 9h	45.270
SRR8749030	Uninduced	16.419
SRR8749031	Uninduced	3.862
SRR8749032	Uninduced	7.528

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.035
SRR8400027	Control - Root	23.181