Gene detail information of Glyur000568s00030988 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G22170.1 | 4.00E-52 | Lipase/lipooxygenase, PLAT/LH2 family protein |
| NR | KEH20853.1 | 5.87E-108 | PLAT-plant-stress protein [Medicago truncatula] |
| trEMBL | tr|A0A072TVI2|A0A072TVI2_MEDTR | 2.00E-108 | PLAT-plant-stress protein {ECO:0000313|EMBL:KEH20853.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00568 | 39378 | 40549 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000568s00030988.1 | PF01477.18 | PLAT | 34 | 151 | 1.30E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 203.119 |
| SRR1783600 | control | 204.285 |
| SRR1783602 | moderate drought stress | 90.440 |
| SRR1811619 | moderate drought stress | 89.114 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 231.390 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 228.898 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 61.492 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 60.201 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 77.815 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 77.551 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 39.585 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 39.701 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 461.242 |
| SRR2868004 | Drought Stress (root) | 161.355 |
| SRR2967015 | Control (root) | 201.211 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 55.245 |
| SRR9715740 | Leaf | 14.049 |
| SRR9715741 | Leaf | 25.436 |
| SRR9715739 | Root | 359.128 |
| SRR9715742 | Root | 201.981 |
| SRR9715743 | Root | 208.448 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 62.709 |
| SRR8749028 | MeJA induced 9h | 20.452 |
| SRR8749029 | MeJA induced 9h | 46.234 |
| SRR8749030 | Uninduced | 2.253 |
| SRR8749031 | Uninduced | 0.951 |
| SRR8749032 | Uninduced | 4.734 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 272.042 |
| SRR8400027 | Control - Root | 248.441 |