Gene detail

Gene detail information of Glyur000568s00030983

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G10190.1	0	Major facilitator superfamily protein
NR	XP_004504065.1	0	PREDICTED: hexuronate transporter-like [Cicer arietinum]
COG	YP_004174130.1	5.00E-36	major facilitator superfamily transporter [Anaerolinea thermophila UNI-1]
trEMBL	tr\|A0A072U4U1\|A0A072U4U1_MEDTR	0	MFS transporter {ECO:0000313\|EMBL:KEH20845.1}

Sequence

Transcript Sequence

>Glyur000568s00030983.1
ATGAAATCGGAGACAGTGACGTTGGTGCTGGTGAATCTGGCAGGTATAATGGAGAGAGCCGATCAGTCATTGCTACCAGGAGTGTACAAAGAGGTTGGTGCTGCCCTCAACGCTGACCCAACCGCGTTGGGTTCACTCACACTCTTCCGGTCCCTTGTGCAATCCTTATGCTACCCTCTCGCCGCATACCTCGCCACGCGTCACAACCGTGCCCACGTCATCGCTCTCGGTGCTTTCCTTTGGGCTGCTGCTACTTTCCTCGTTGCCATCTCCTCCACCTTCTTACAGGTGGCTATTTCAAGAGGTTTAAACGGGATAGGACTCGCCATTGTTGTTCCAGCAATTCAGTCTCTTGTTGCTGACTCCACCATTGATAGCAACCGTGGAGTGGCTTTTGGGTGGCTACAACTGACAGGAAACTTTGGAAGCATCATTGGTAGTCTCTTCTCTGTACTCATGGCCTCCACAACAATTGTGGGCATACCTGGTTGGAGAATAGCTTTTCATCTTGTTGCATTGATTAGTGTCATAGTTGGTATATTGGTACGCCTATTTGCTAATGATCCACACTATTCAAATAATGATGGCAGAGCTACGTATCAAGCTCCAAACAAGTCCTTTTATTCNGAATTGAAAGATCTAATGAAAGAAGCAAAGTCAGTTATGAGAATTCCATCGTTTCAGATAATTGTGGCTCAGGGAGTGTTTGGATCATTCCCCTGGTCAGGCTTGTCATTTGCCACTCTTTGGTTAGAACTAATAGGCTTCTCTCACGGGACAACAGCACTGCTTTGGACACTATTTATAGTTGCTGCTTCATTTGGTTCTCTGTTTGGAGGATGGATGGGAGATTATTTATCCCTACGGTTACCTAACACTGGGAGAATAATGTTGTCACAAATAAGTGCTGGTTCAGCCATTCCTTTAGCAGCAATTTTGTTGCTGGCATTGCCTGATGATCCATCCACANCCTTCATTCATGGCCTTGTTTTCGTCATCATGGGATTCTGCACATCCTGGAATGCTCCAGCAACTAACAATCCAATATTTGCAGAAATAGTCCGTGAGAAGTCCCGAACTGCTATATATGCTTTGGATCAGTCTTTCGAGTCTATATTGGGGTCCTTTGCCCCTCCTCTTGTTGGGGTTTTGGCTCAGCATGTGTATGGTTATAGACCAATGCCAAAAGGGTCCTCAGATTCTGTTGAGATTGAAACAGATAGCGAAAATGCTGCATCACTCGCCAAGGCAATTTATACTGCTTTTGTAATTCCTATGGCACTCTGCGTCTCCATTTACTCATTCCTTTACTGCACATACCCGAGGGACAGAGAGCGAGCAAGAATGGTTGCATTGGTGGAATCAGAGATGCAGCAACTAGAAATGGAAGACTGCACAAAAGAAGAATACTGTGAAATTCACGTGTTAGGATCAAATGGGTTGAATGGTAAAGAAAGTNGCAACATTGATATGGGTTATATAAGGGAAGAGAGCATAGTCTTAGATGACAGTGATGAGAAAGTTTTGCTGTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00568	5946	10194	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000568s00030983.1	PF07690.11	MFS_1	13	378	2.60E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.242
SRR1783600	control	0.285
SRR1783602	moderate drought stress	0.124
SRR1811619	moderate drought stress	0.124

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.494
DRR006520	Root Summer glycyrrhizin high producing strain	0.517
DRR006521	Root Winter glycyrrhizin high producing strain	0.072
DRR006522	Root Winter glycyrrhizin high producing strain	0.070
DRR006523	Root Summer glycyrrhizin low producing strain	0.574
DRR006524	Root Summer glycyrrhizin low producing strain	0.756
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.817
SRR2868004	Drought Stress (root)	14.770
SRR2967015	Control (root)	13.500

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.099
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.059
SRR9715739	Root	0.122
SRR9715742	Root	0.193
SRR9715743	Root	0.315

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.386
SRR8749028	MeJA induced 9h	0.983
SRR8749029	MeJA induced 9h	2.768
SRR8749030	Uninduced	0.493
SRR8749031	Uninduced	0.205
SRR8749032	Uninduced	0.413

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.903
SRR8400027	Control - Root	4.420