Gene detail information of Glyur000567s00021965 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G19855.1 | 6.00E-38 | Chaperonin-like RbcX protein |
| NR | XP_004500203.1 | 1.13E-73 | PREDICTED: uncharacterized protein LOC101506320 [Cicer arietinum] |
| trEMBL | tr|C6TEV2|C6TEV2_SOYBN | 4.00E-72 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G45070.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00567 | 112071 | 114112 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000567s00021965.1 | PF02341.10 | RcbX | 82 | 167 | 2.70E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.130 |
| SRR1811619 | moderate drought stress | 0.189 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.487 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.468 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.376 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.382 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.949 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.890 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 28.364 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 27.764 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.459 |
| SRR2868004 | Drought Stress (root) | 4.503 |
| SRR2967015 | Control (root) | 2.165 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 88.978 |
| SRR9715740 | Leaf | 90.454 |
| SRR9715741 | Leaf | 86.883 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.399 |
| SRR9715743 | Root | 0.748 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.618 |
| SRR8749028 | MeJA induced 9h | 2.182 |
| SRR8749029 | MeJA induced 9h | 1.693 |
| SRR8749030 | Uninduced | 2.382 |
| SRR8749031 | Uninduced | 1.500 |
| SRR8749032 | Uninduced | 2.244 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.230 |
| SRR8400027 | Control - Root | 2.535 |