Gene detail

Gene detail information of Glyur000567s00021958.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G48300.1	ADP glucose pyrophosphorylase 1
NR	XP_003519654.1	PREDICTED: glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic-like isoform 1 [Glycine max]
COG	YP_007066226.1	glucose-1-phosphate adenylyltransferase [Calothrix sp. PCC 7507]
Swissprot	tr\|P52417\|GLGS2_VICFA	Glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic (Precursor)
trEMBL	tr\|I1JJP2\|I1JJP2_SOYBN	Glucose-1-phosphate adenylyltransferase {ECO:0000256\|RuleBase:RU003565}

Sequence

Transcript Sequence

>Glyur000567s00021958.1
ACGGTCACATACATAATAAGAGAGAGGCGCACACACACTTATTCAGTTATTCTGAACCACACACACTAAATTGTTTCTCCGAAGCGAGCAAAGTGTGAGTGTAACAAACACACAGAGAGAAAGCAACAATGGCGTCTATGGCTGCAATGGGTGTTCTGAAAGTCCCGTCTTCTTCTTCTTCTTCTTCTTCCAATGTGGGGAAGAAATCCATTCCAGTTCCACGCAGCCTTTCATTCTCCGCGTCACAACTCTCCGGCGACAAGCTCACCACCGTTGGAGGAACACGGAGAGTAAGCTGCACCCGCAAGCCCCTGATTGTTACCCCCATGGCCGTTTCTGATTCCCAGAACTCCCAAACGTGCCTTGATCCCGATGCTAGCAGGAGTGTACTTGGCATTATACTTGGAGGTGGTGCCGGGACTCGTCTTTATCCACTCACCAAGAAGCGGGCGAAACCGGCGGTTCCTCTAGGAGCTAACTATAGGCTAATTGATATTCCTGTGAGCAACTGCCTGAATAGCAACATATCCAAGATCTATGTCCTCACACAATTCAATTCCGCGTCGCTCAACCGCCATCTCTCCCGCGCTTATGCGAGCAACATGGGTGGCTACAAGAATGAGGGTTTTGTCGAGGTCCTTGCTGCCCAGCAGAGTCCTGAGAATCCTAATTGGTTCCAGGGTACTGCTGATGCTGTGAGACAATATCTATGGCTTTTTGAAGAGCACAATGTTTTGGAGTTCTTAGTTCTAGCTGGTGACCATTTGTATCGAATGGATTACGAGAAATTTATCCAGGCACATAGGGAAACCGATGCTGATATCACTGTGGCTGCACTGCCAATGGATGAAAAGCGTGCCACTGCATTTGGCCTGATGAAGATCGATGAAGAGGGGCGGATAATTGAATTTGCAGAAAAACCAAAGGGAGAACAGTTGAAAGCTATGAAGGTTGATACTACTATTTTAGGTCTTGATGATGAGAGAGCAAAGGAAATGCCTTTTATTGCTAGCATGGGTATATATGTTGTCAGCAAAAATGTGATGCTAGACCTGCTCCGTGAGAAGTTTCCTGGTGCAAATGACTTTGGGAGTGAAGTGATTCCTGGTGCAACTTCCATTGGAATGAGGGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTTAGTTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCCATCTAAGATGCTTGACGCAGATATCACTGATAGTGTTATCGGTGAAGGATGTGTAATCAAGAACTGCAAAATTCACCATTCTGTGGTTGGGCTGCGATCTTGCGTATCCGAAGGTGCAATTATTGAAGACACTTTGTTAATGGGGGCGGATTATTATGAGACGGATGCTGATAAGAGGTTTTTGNCTGCTAAAGGCAGTGTTCCAATTGGCATTGGCAGGAATTCCCATATCAAAAGGGCAATTATTGACAAGAATGCTCGAGTTGGGGAAAATGTTAAGATAATTAACAGTGACAATGTNCAAGAAGCTGCAAGGGAAACAGACGGTTATTTCATAAAAAGCGGGATCGTCACAGTAATCAAGGATGCGTTGATTCCTAGTGGAACTGTCATCTAAACCTTCTTAAATCCTAATGGTGAGTGAGAGACTTTGGAGCTCATTTTCACACTGTTCTGCTTCCACGCACGTCAAAGATAGGCTTTCTGATGCATCATATCATATATGATATTTTTGGCTAGTGGCTTGTAAATAAGAATAGCGAAAGAGAGGGTAGTCACGCTGTAACTGTAAAGTTCGTTATTCAGTTAGAATAAAAGTTATTCTGCATTATTGACATGCATGATCATGTTCTTCTGCATATTGTAATGGAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00567	72081	75917	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00975	glgC	EC:2.7.7.27	Starch and sucrose metabolism	map00500
			Amino sugar and nucleotide sugar metabolism	map00520
			Biofilm formation - Escherichia coli	map02026

Gene Ontology

biological_process

GO:0005978 glycogen biosynthetic process

GO:0009058 biosynthetic process

molecular_function

GO:0008878 glucose-1-phosphate adenylyltransferase activity

GO:0016779 nucleotidyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000567s00021958.1	PF00483.18	NTP_transferase	89	362	3.20E-73

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	602.420
SRR1783600	control	603.883
SRR1783602	moderate drought stress	314.791
SRR1811619	moderate drought stress	311.957

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	188.081
DRR006520	Root Summer glycyrrhizin high producing strain	186.477
DRR006521	Root Winter glycyrrhizin high producing strain	104.669
DRR006522	Root Winter glycyrrhizin high producing strain	102.191
DRR006523	Root Summer glycyrrhizin low producing strain	160.359
DRR006524	Root Summer glycyrrhizin low producing strain	160.943
DRR006525	Leaf Summer glycyrrhizin high producing strain	215.729
DRR006526	Leaf Summer glycyrrhizin high producing strain	213.651

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	71.652
SRR2868004	Drought Stress (root)	41.118
SRR2967015	Control (root)	22.693

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	103.117
SRR9715740	Leaf	128.526
SRR9715741	Leaf	108.503
SRR9715739	Root	186.526
SRR9715742	Root	292.359
SRR9715743	Root	274.188

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.367
SRR8749028	MeJA induced 9h	11.236
SRR8749029	MeJA induced 9h	11.603
SRR8749030	Uninduced	1.807
SRR8749031	Uninduced	0.514
SRR8749032	Uninduced	0.677

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	463.651
SRR8400027	Control - Root	533.150