Gene detail

Gene detail information of Glyur000567s00021954.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G09150.2	5.00E-78	phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)
NR	XP_004491666.1	2.20E-152	PREDICTED: phytochromobilin:ferredoxin oxidoreductase, chloroplastic-like [Cicer arietinum]
Swissprot	tr\|Q9SR43\|PFBS_ARATH	4.00E-96	Phytochromobilin:ferredoxin oxidoreductase, chloroplastic (Precursor)
trEMBL	tr\|K7KBQ4\|K7KBQ4_SOYBN	1.00E-152	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G47490.2}

Sequence

Transcript Sequence

>Glyur000567s00021954.1
GTTTACTAGTTTAGCACACGTGTGGCTGATTTCCAAGTACAANAATGGCACTGTAGCGGCAAATCGAAGAGAAGATTAATCTTTGATGGTTTTAATTAACTTGTTGAGTGCAGAAGCGGCTTAATGCTTAATGGGGTTTGGACTTGGTGGCGGTTGCTCCTCCTCCTCTTCTTCAAGCTTTTGTTTGCAGCACCCACTTCCTCCGTTCACAAGAATTAGAATAGCCACTAATACTAACAGTAGTGGTAGCTGGAGGAGCTACAGAAAACGTTGCAGCAGCATACAAAGCCTTTCAGTATCTTATCACAAGTTTGTTGATTTTGCTTTGGATGAAACCAAACGCCATACCCACTTGCTCCCTTCACCTTTACAGGAAAAGTTTAATTCCATGAATTCTAAGGATGGTAAAGGAACGCTTAGTATGCTATCATTTCAAGCTTCCAAGATTAGGCTTCTACGTAGTATGATCATTGAGACAGAAACAATGCAGGTGTTGGATTTTACTGTCTTTCCAAAAGCAGAGTATGATGTCCCCATATTTTGTGCTAACTTTTTCACGTCCGCTAAAACAAACATTGTTGTGCTGGACCTTAACCCCTTGCATGATATCATCAATCAGGATGACTACAAGGAAAAGTTTACTTCAAGCCCACAAAAATATGATATTCTGTACTCTGCGTTCAGGGATTATTACAAGGTATGGTTGGAATTGATAGACAACGCAGTAAAAGAGACCGATGGATCTCAGATTTTCCGCAATCTTGAAGCACAACATAGATATCTGACATGGAGAGCCGAAAAGGATCCGGGACAAGGTGTTTTGAAGAAGCTGATTGGGGACACACTTGCCAAGGATTTATTAAGAAGCTTTCTCTTTAATGGAGTCGATGAACTAGGAAGCAAAAAGTTCAATGATTATTTTCCACACTACTGCAGCGAGGATGGAGCTCTAAATAAGAAAGGCGGTATTGTTGGGAAGTCTTTTGAAAACCGCCCATGGAACNCAAGAGGAGAGTTCCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00567	27672	32077	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K08101	E1.3.7.4	EC:1.3.7.4	Porphyrin and chlorophyll metabolism	map00860
			Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

biological_process

GO:0010024 phytochromobilin biosynthetic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor

GO:0050897 cobalt ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000567s00021954.1	PF05996.7	Fe_bilin_red	65	172	3.20E-21
Glyur000567s00021954.1	PF05996.7	Fe_bilin_red	174	250	1.60E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.569
SRR1783600	control	7.554
SRR1783602	moderate drought stress	7.458
SRR1811619	moderate drought stress	7.304

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.320
DRR006520	Root Summer glycyrrhizin high producing strain	9.052
DRR006521	Root Winter glycyrrhizin high producing strain	12.885
DRR006522	Root Winter glycyrrhizin high producing strain	12.529
DRR006523	Root Summer glycyrrhizin low producing strain	7.953
DRR006524	Root Summer glycyrrhizin low producing strain	8.615
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.232
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.208

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.419
SRR2868004	Drought Stress (root)	9.431
SRR2967015	Control (root)	9.336

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.749
SRR9715740	Leaf	7.722
SRR9715741	Leaf	5.661
SRR9715739	Root	2.008
SRR9715742	Root	4.349
SRR9715743	Root	3.523

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.808
SRR8749028	MeJA induced 9h	8.627
SRR8749029	MeJA induced 9h	9.757
SRR8749030	Uninduced	4.953
SRR8749031	Uninduced	2.463
SRR8749032	Uninduced	3.370

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.461
SRR8400027	Control - Root	9.567