Gene detail information of Glyur000567s00021952.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G48170.1 | 6.00E-33 | F-box family protein |
| NR | XP_003519657.1 | 1.74E-85 | PREDICTED: F-box protein SNE-like [Glycine max] |
| Swissprot | tr|Q9LUB6|SNE_ARATH | 3.00E-44 | F-box protein SNE |
| trEMBL | tr|I1JJP5|I1JJP5_SOYBN | 6.00E-86 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G47500.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00567 | 17068 | 17526 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000567s00021952.1 | PF12937.2 | F-box-like | 18 | 59 | 1.40E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.827 |
| SRR1783600 | control | 2.068 |
| SRR1783602 | moderate drought stress | 2.216 |
| SRR1811619 | moderate drought stress | 2.644 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.704 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.903 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.241 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.241 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.999 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.003 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.032 |
| SRR2868004 | Drought Stress (root) | 7.230 |
| SRR2967015 | Control (root) | 6.941 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.239 |
| SRR9715740 | Leaf | 0.208 |
| SRR9715741 | Leaf | 0.689 |
| SRR9715739 | Root | 6.352 |
| SRR9715742 | Root | 1.997 |
| SRR9715743 | Root | 2.224 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.498 |
| SRR8749028 | MeJA induced 9h | 1.525 |
| SRR8749029 | MeJA induced 9h | 3.118 |
| SRR8749030 | Uninduced | 4.548 |
| SRR8749031 | Uninduced | 2.906 |
| SRR8749032 | Uninduced | 7.001 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.889 |
| SRR8400027 | Control - Root | 6.994 |