Gene detail

Gene detail information of Glyur000566s00023619

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G38510.2	8.00E-69	Rhomboid-related intramembrane serine protease family protein
NR	XP_003541279.1	0	PREDICTED: uncharacterized protein LOC100808799 isoform X1 [Glycine max]
COG	NP_390367.2	3.00E-20	rhomboid protease GluP [Bacillus subtilis subsp. subtilis str. 168]
trEMBL	tr\|K7LXT1\|K7LXT1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G07540.2}

Sequence

Transcript Sequence

>Glyur000566s00023619.1
ATGGAGGGAAAGGAATTTTGGTGGATGTTGGATGACATGGATGGATGCGGCAGTTCCAACTTGGTTGGGATTGGAGTAGAGAGGGATTATGCGAGGGAGTTCCACGTTTTCATGGCAGCATTTCCATCATGTTACAAAACTCCCAACAAGGACCAAAATCTACCAACACAAAGTGTAACAAGACAGAATGACAAGAGGTTCATGTATGACTGTGATAACATGCTAAGATCAATGTCTTCAATTCCTGGCCAAATTTGTAGGCCCTCAAATAGAGTCAACAACATCTTTACAAAATCAAGCACAAGAGATAGGAATGCACCTAGGTGCATGATCCATTGTAGTCCCAGAGATTCTTCGCATAAGGCCGCGAAAAAAGTTAGTACTCAAGGATGTTATTCAAGGAGAGGGGGAAACAATTCCACTGTTTGGTGTTCAGCAGATTCGAGCTCTATCGAGAAGCAACTAAGTTCATTGGATTCTTATTTTGCAAAACTCCAAGATGATGCAAAACTAGGTACCGCTGATACATCGAATGAGGCAATGGCGGTGGTACATCAAAGAGATGGTCAATCCGGATCAAAAAATGGACTGGAGTCTCTTGATGAATATCTTGGCAAACTGAATAATGGCATAAACCAAGAATCTCGCATGCCATCTTATAAAACGAAATACTTATGTGGATATAAGAAGAATAAAAGGTGTACAGGGTTCAGTGGTATATTGGCATCAGTAAACATTGCAGTGTTTCTATTTGAAATAGCAAGTCCTGTAAGGAATGCTGACTTAGAGCTGTTTTCGCTTCCCCTACTATACGGCGCAAAGATAAATCATTTGATCGTTGTTGGAGAATGGTGGAGGCTTGTAACACCAATGTTTCTGCATGCAGGAATATTTCACATGGCTCTCAGTTGTTGGGCCCTTGTGTCATTTGGGCCTCAAGTTTGCAAAGGATATGGTTCATTTACATTTTTCTTGATCTACATACTGGGTGGAGTTTCTGGCAACTTGGCAAGTTTTCTACACACACCAGATCCAACTGGACCAGTATTTGCAATAATTGGTGCTTGGCTCATGTATCAGATTCAAAATAGAGATGTTGTTGCAAATGATGATGCTTCAGAGAACCTGTTCCAGAAGGCATTAATTATTACAGCTCTTGGTTTCATATTAAGCAACCTTGGTCCAATTGATGAGTCACACTTTGGAGCAGCTTTCACGGGCATGGCATATGGCTTTCTAACCAGCCCAGCTCTTCAACTGGATGATACATCACCAGGAGTTGGTCGTGAAGGACTCAAACTTGTTAGAAAACATGGTGATTCTTGCAAATCACTAATTATATTCACCATATTCATCATTGCTTTAAGCTCACTCCTTTTGTTTATGGAGCCCCCCCTCAATGCACTGGCATCTGTGGATGCAGCAGTTGCTGTAGCCTTGGAATATGTGTCAATATTCGGTTGATAAAGCGTACATTTTTGGCTTTCAGATACAAAAGTATGTTTTGGGGTCTAAAACTAAAAGTATGTTTGTGAAAAAAGAACTCTCTATAGTTATTTTGGATTCAAACGTACTTTTACGGTCTTTAACTGAAAAGTGAAAACCAATAGTGCACTTTATCTTGTAGGAAGGCCGTGGCAACTTCCATACAAAGACATGTACATTGTATAAAGGAAGTAGAGTGAGGAGTGTGGTTTTTTTTACCAAAATAGTGTAAAATGGTTACAAAATTACTAAAATGGTGCAAACTTAAAAGTTATTACCAAAATAGGGTAAGTCGCAATTGCTAGTGGCGACTTTATTTTTTTTTTCTCTCTCTGCAGCAAAGTCACAACTAAGACCGGCGACTTTGCTTTTTTTTTAAAAAATACAGAAGTCATAACACACAATGGCGACTTTTGTTTTTTTATTATATTTTTGTAGAAGTCGCCAACATGAATGACGACTTCAGTTCTCTTTTTTTTCGTGCATGGCAGCCTACATGATGATGGCATGCGATGCAGGTGCATGTGTTTTTTGTGAGGATGCATGACCATGTTATCATCGAGTAGTGGTAGTCTGTAGAGTGCAAGCCTGTAGAATGACATGTATGTTGACATTATTTTTGCTTTAATTTTTTGAGTGGTGTTGTTTTTCTCTTCTTTTTTTGTGATGATCTTATATAGGGGTGTTTGCGGCTCGGTTCGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00566	102025	108897	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0004252 serine-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000566s00023619.1	PF01694.17	Rhomboid	282	416	1.70E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.015
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.028
DRR006520	Root Summer glycyrrhizin high producing strain	0.049
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	54.112
DRR006526	Leaf Summer glycyrrhizin high producing strain	54.379

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.273
SRR2868004	Drought Stress (root)	1.487
SRR2967015	Control (root)	0.587

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	49.160
SRR9715740	Leaf	41.458
SRR9715741	Leaf	74.084
SRR9715739	Root	0.000
SRR9715742	Root	0.072
SRR9715743	Root	0.166

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.239
SRR8400027	Control - Root	2.266