Gene detail information of Glyur000566s00023617 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G38660.1 | 2.00E-64 | acclimation of photosynthesis to environment |
| NR | NP_001240037.1 | 4.35E-129 | uncharacterized protein LOC100810571 [Glycine max] |
| trEMBL | tr|C6T7J8|C6T7J8_SOYBN | 2.00E-129 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G06090.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00566 | 84936 | 89884 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000566s00023617.1 | PF11016.3 | DUF2854 | 110 | 278 | 1.40E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.662 |
| SRR1783600 | control | 3.726 |
| SRR1783602 | moderate drought stress | 4.795 |
| SRR1811619 | moderate drought stress | 4.785 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.320 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.305 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 20.250 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 19.648 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.269 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.845 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 188.653 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 187.949 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.649 |
| SRR2868004 | Drought Stress (root) | 7.600 |
| SRR2967015 | Control (root) | 5.407 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 132.007 |
| SRR9715740 | Leaf | 197.823 |
| SRR9715741 | Leaf | 118.097 |
| SRR9715739 | Root | 3.258 |
| SRR9715742 | Root | 5.333 |
| SRR9715743 | Root | 4.866 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.710 |
| SRR8749028 | MeJA induced 9h | 1.342 |
| SRR8749029 | MeJA induced 9h | 0.973 |
| SRR8749030 | Uninduced | 2.818 |
| SRR8749031 | Uninduced | 1.050 |
| SRR8749032 | Uninduced | 2.266 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.047 |
| SRR8400027 | Control - Root | 12.622 |