Gene detail information of Glyur000566s00023616 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G29540.2 | 2.00E-32 | RNApolymerase 14 kDa subunit |
| NR | AFK35687.1 | 6.36E-60 | unknown [Medicago truncatula] |
| COG | NP_577779.1 | 6.00E-06 | DNA-directed RNA polymerase subunit L [Pyrococcus furiosus DSM 3638] |
| Swissprot | tr|Q38859|NRPBB_ARATH | 3.00E-10 | DNA-directed RNA polymerases II, IV and V subunit 11 |
| trEMBL | tr|I3S5Z5|I3S5Z5_MEDTR | 2.00E-60 | Uncharacterized protein {ECO:0000313|EMBL:AFK35687.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00566 | 81712 | 83797 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000566s00023616.1 | PF13656.1 | RNA_pol_L_2 | 11 | 85 | 7.70E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.066 |
| SRR1783600 | control | 16.462 |
| SRR1783602 | moderate drought stress | 28.412 |
| SRR1811619 | moderate drought stress | 27.637 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 57.697 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 53.951 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 47.417 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 46.499 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 43.602 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 41.727 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.526 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.837 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.606 |
| SRR2868004 | Drought Stress (root) | 5.998 |
| SRR2967015 | Control (root) | 4.831 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.766 |
| SRR9715740 | Leaf | 3.067 |
| SRR9715741 | Leaf | 3.078 |
| SRR9715739 | Root | 3.418 |
| SRR9715742 | Root | 6.893 |
| SRR9715743 | Root | 7.634 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 19.949 |
| SRR8749028 | MeJA induced 9h | 13.227 |
| SRR8749029 | MeJA induced 9h | 14.104 |
| SRR8749030 | Uninduced | 10.448 |
| SRR8749031 | Uninduced | 6.307 |
| SRR8749032 | Uninduced | 5.110 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.133 |
| SRR8400027 | Control - Root | 18.544 |