Gene detail

Gene detail information of Glyur000565s00025200

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G25910.1	3.00E-69	NFU domain protein 3
NR	XP_003594957.1	1.20E-140	NifU-like protein [Medicago truncatula]
COG	YP_007134568.1	1.00E-32	nitrogen-fixing NifU domain-containing protein [Stanieria cyanosphaera PCC 7437]
Swissprot	tr\|Q84RQ7\|NIFU3_ARATH	2.00E-93	NifU-like protein 3, chloroplastic (Precursor)
trEMBL	tr\|G7IN05\|G7IN05_MEDTR	4.00E-141	Nitrogen fixation protein NifU {ECO:0000313\|EMBL:AES65208.1}

Sequence

Transcript Sequence

>Glyur000565s00025200.1
CTCTTATTTTATTTTCTTTTATTTTATCATCAAACACAACCAATGTCAGCCAATCAAGAAACACTTGCTATCAGCATCTGCAGTTCACCNTTGCTTCTTCCTGTGTTGCTAATATCAGAACTGAACTTCTTCTAGTAACAAAATAAAAAATGAGAGATTATTTTATATTATAGCAAAAAAAATCTCAGTTTCATTCTCTTTATGGTAGTAGCATTCTGGAACTGGTTTTCCCACTCACACTCAGATGTTGGGTGGTGGTTCACTCTCAACCCCAACAACAACTCAAAGCCTCAAGGCAACAAGAACAATTTCANTGCTTTATCCATCTCATAGATTATTGTCTACCCACTTATGTCTCTTTAAGATTAAGAGCNTAGTATCAGCTACCAGAGGATTTTCATCAAGAGAGAGTTGTTTTCTTAGAGGTCACCAAATCAATATCAAGCAGTTTTTTGGGCTTATCTCTGGTCGTGCTCCACGAAAAAAAGCAGGTGCCACTGTGCTCAAATCTGATGTTGGAGTAGTTGTTTCTCCAAGCTGTGCCCTGCCACTGACAGAAGAGAATGTGGAGAAGGTTTTGGATGAGGTGAGGCCTGGCTTGATGGCTGATGGAGGAAATGTGGCCTTGCATGAGATTGATGGCCTTGTTGTTGTCCTCAAGCTACAAGGAGCATGTGGATCATGTCCTAGCTCAACCATGACATTGAAGATGGGAATCGAAACTCGCCTCCGCGATAAGATCCCAGAAATCATGGAAGTGGAGCAGATACTAGACACTGAGACTGGTCTTGAGTTAACTGANGAAAATGTTGAAAGTATTCTTTCTGAAATCAGACCTTATCTTGTTGGCACTGGGGGAGGAATATTAGAGCTTGTTCAGATTAATGATTATGTTGTTAAAGTTCGGTTAAGTGGACCGGCAGCTGGAGTTATGACGGTTCGTGTCGCCTTAACACAGAAGCTGAGAGACAAGATACCTTCCATTGCGGCTGTGCAGCTAATAGACTGATGTAACATACATACTAGTTCTTTGTATTTTGATTCTTCATCTGTTAAAGAGATGAAAATGGAACCAATCCATAGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00565	103859	106295	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0016226 iron-sulfur cluster assembly

molecular_function

GO:0005506 iron ion binding

GO:0051536 iron-sulfur cluster binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000565s00025200.1	PF01106.12	NifU	108	174	2.10E-25
Glyur000565s00025200.1	PF01106.12	NifU	189	250	7.80E-07
Glyur000565s00025200.2	PF01106.12	NifU	99	165	2.00E-25
Glyur000565s00025200.2	PF01106.12	NifU	180	241	7.30E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.448
SRR1783600	control	0.342
SRR1783602	moderate drought stress	1.214
SRR1811619	moderate drought stress	1.160

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.298
DRR006520	Root Summer glycyrrhizin high producing strain	0.198
DRR006521	Root Winter glycyrrhizin high producing strain	0.102
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.406
DRR006524	Root Summer glycyrrhizin low producing strain	0.507
DRR006525	Leaf Summer glycyrrhizin high producing strain	61.943
DRR006526	Leaf Summer glycyrrhizin high producing strain	60.731

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.502
SRR2868004	Drought Stress (root)	1.176
SRR2967015	Control (root)	1.396

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	41.708
SRR9715740	Leaf	78.326
SRR9715741	Leaf	45.470
SRR9715739	Root	0.323
SRR9715742	Root	0.304
SRR9715743	Root	0.509

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.065
SRR8749028	MeJA induced 9h	0.178
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.028
SRR8749031	Uninduced	0.035
SRR8749032	Uninduced	0.051

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.540
SRR8400027	Control - Root	1.673