Gene detail

Gene detail information of Glyur000564s00029588.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G05610.2	4.00E-82	alfin-like 1
NR	XP_007133887.1	1.27E-154	hypothetical protein PHAVU_010G000500g [Phaseolus vulgaris]
Swissprot	tr\|Q75IR6\|ALFL1_ORYSJ	5.00E-118	PHD finger protein ALFIN-LIKE 1
trEMBL	tr\|V7ANT5\|V7ANT5_PHAVU	5.00E-155	Uncharacterized protein {ECO:0000313\|EMBL:ESW05881.1}

Sequence

Transcript Sequence

>Glyur000564s00029588.1
ATTTTTTGTGAGTAGCAATTGGGTTTAAGGTCCAATTGAGATCCTTGGCAATTAGGTCGTTTGAGAAGCACACACAATGACACAAACAAATACTCTACTACTACGTTTGCATCTCTTTCCCAGTCCCACCTTTGTATCTCTCTCATTAGGTCGTTTCCTTCACATCATCACGTGCATCTGTGATCGACCCTTCTCATGGTCTCGACCCTGCACCCTCATCGCGATTTCTAGAGCCTTCGCGAAACCGAACCCTCCAATCGCTTAGATCTCAATTTGAAAATGGCGTCCAGTCCCCGCACCGTCGAAGAGATCTTCAAAGACTACACCGCTCGAAGAGATGCCATCATTCGTGCTTTATCACAAGATGTTGATGAATTCTTTGGACTCTGTGATCCAGATAAGGACAACTTGTGCCTCTATGGACATCCAAATGAATCATGGGAAGTGACTCTGCCAGCAGAGGAGGTTCCACCGGAGCTTCCGGAGCCAGCTCTCGGAATCAATTTTGCAAGGGATGGAATGAATCGCAGGGACTGGCTTTCCCTGGTTGCTGTGCACAGTGATTCNTGGTTGGTTTCTGTGGCCTTTTATCTTGGAGCTCGTCTTAACCGCAATGAAAGGAAACGTTTATTTAGCTTGATCAATGATCTTCCTACTGTTTTTGAAGTTGTAACTGAGAGGAAGCCAATAAAGGACAAACCCACTGCAGACAGTGGAAGCAAATCTCGGGGCAGCACCAAGAGATCAAGTGATGGGATAGTTAAAAGCAACCCAAAGTTCGCAGACGAAGGTTATGAGGAGGAAGATGATGAGCACAGTGAGACCCTCTGTGGGAGCTGCGGCGGAAACTACAACGCGGATGAATTTTGGATTGGCTGTGATATCTGTGAGAGGTGGTACCATGGGAAATGTGTGAAGATAACCCCTGCAAAGGCTGAGAGCATAAAGCAATACAAATGCCCATCGTGCAGCATGAGGCGGGGCAGGCCCTAACCTTGAAGGCAAATATGTGAAAGTGAATAATACTGTGTCATGGCTGATGACACAAAAATACCTCAATTTGTCAATTCTCTTGTAGAAGTTCATTTTAATGGGTATAGTATCTAGTTAGTAGGTGGTTTTTTAACATGGGGAAATTGTAAATTTCCCACCAATGGATGGTCCCATGTACTTTCACTGGTTTTTACCAGTTGTTATTGGTTTTTATAGCATTTGAACTTTCCTCCCTTTAACAATTGAATATTCACTGTTTTACCACATTATCTCTTTCCATGTTAATCACCAAGAGGTCTTCGATGGGAAAGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00564	87939	91927	-

Gene family

Gene family	subfamily
Transcription Factors Family	Alfin-like

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

GO:0042393 histone binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000564s00029588.1	PF12165.3	DUF3594	6	134	1.00E-73
Glyur000564s00029588.1	PF00628.24	PHD	184	231	2.20E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	72.271
SRR1783600	control	73.052
SRR1783602	moderate drought stress	67.797
SRR1811619	moderate drought stress	67.297

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	67.658
DRR006520	Root Summer glycyrrhizin high producing strain	66.565
DRR006521	Root Winter glycyrrhizin high producing strain	93.475
DRR006522	Root Winter glycyrrhizin high producing strain	90.317
DRR006523	Root Summer glycyrrhizin low producing strain	64.088
DRR006524	Root Summer glycyrrhizin low producing strain	63.191
DRR006525	Leaf Summer glycyrrhizin high producing strain	45.545
DRR006526	Leaf Summer glycyrrhizin high producing strain	45.574

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	108.779
SRR2868004	Drought Stress (root)	103.121
SRR2967015	Control (root)	107.940

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	57.867
SRR9715740	Leaf	43.589
SRR9715741	Leaf	71.170
SRR9715739	Root	68.142
SRR9715742	Root	60.990
SRR9715743	Root	57.513

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	130.222
SRR8749028	MeJA induced 9h	92.997
SRR8749029	MeJA induced 9h	114.791
SRR8749030	Uninduced	83.182
SRR8749031	Uninduced	85.332
SRR8749032	Uninduced	104.925

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	89.478
SRR8400027	Control - Root	85.546