Gene detail

Gene detail information of Glyur000563s00023588

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G44190.1	2.00E-118	FAD/NAD(P)-binding oxidoreductase family protein
NR	KEH29779.1	0	pyridine nucleotide-disulfide oxidoreductase family protein [Medicago truncatula]
COG	YP_004582960.1	6.00E-40	FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Frankia symbiont of Datisca glomerata]
Swissprot	tr\|Q8GXR9\|DHNA_ARATH	3.00E-08	Alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial (Precursor)
trEMBL	tr\|A0A072UJ51\|A0A072UJ51_MEDTR	0	Pyridine nucleotide-disulfide oxidoreductase family protein {ECO:0000313\|EMBL:KEH29779.1}

Sequence

Transcript Sequence

>Glyur000563s00023588.1
CAATGACGCAACGACATATCTATTTATGTTGTTGTGAGAACACTGAACATAACAATCAATCATTAAAAGTTAATTTCAATTGTGATCAAAGGAAAGGTTGCAACTCACAAACAAGCGTGAGAAATGGTGGAAAAGAAAGTGGTCATCATAGGAGGTGGTGTTGCCGGTGCCATCCTCGCAAAAACCTTGCAACATCATGCCAACGTCACCCTTATTGATCCGAAGGAGTATTTTGAGATTCCATGGGCAAGCTTGAGGGCAATGGTTGAGCCATCCTTTGCAGAAAGGACTGTGATCAACCATAGAGAGTACTTCACAAAAGGCGACCTTGTTATATCCAGTGCCACCAGCATCTCTGAAACTGAAGTCTTCACTCAAGATGGCAGCCAGATTGCCTATGATTATCTTGTTGTTGCCACTGAAAATACCAAGATAAAATCTGCACGTTCAATTTTGATTGTTGGTGGAGGTCCAACTGGTGTTGAGCTTGCAGCAGAGATTGCTGTTGATTTCCCTGATAAGAAGGTCACTATAGTGCATAAGGGGTCTAGGTTGCTGGAATACATTGGAACAAAGGCTTCAAGGAAGACTTTGAAGTGGCTGAAATCAAGGAAAGTTGAGGTGAAACTAGAGCAATCAGTTGACTTGAACTCCTCCACAGATGAAAATAGGACATATCAAACCTCACTTGGAGAGACAATCGAAGCAGATACACAATTTCTATGCACAGGGAAACCTCTTGGTTCAGCATGGCTTAGAGAAACCCTTTTGAAGGATGACTTGGATGGTCATGGAAGGATCCAGGTTGATGAACACTTGAGAGTGAAGGGCCGGAGCAATATTTTTGCAATTGGAGATATTACAGACATTCAAGAAATCAAACAAGGGGTGTATGCACAAGGTCATGCTCNGTTGGTTGCCAAGAACTTGAGGCTATTGATAGAGGGAGGAGGAAAAGAACGTAAATTGGGAACTTACAAGGCACAGCCACCAATATCTATTGTTTCACTTGGCAGGAAACACGGGGTTGCACAATTCCCTTTCATGACAATCCTTGGAAGGTTGCCTGGTATGATCAAGTCAGGGGATTTGTTTGTGGGTAAAACAAGAAAGGAATTAGGACTTGAACCTAATGTTAAAAAATCTTNATTTGATATGATTGTGTATTCCATCATATTCCAATGTGNGTACCTGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00563	65060	67886	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000563s00023588.1	PF00070.22	Pyr_redox	109	174	1.20E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	29.646
SRR1783600	control	29.737
SRR1783602	moderate drought stress	36.163
SRR1811619	moderate drought stress	35.985

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.317
DRR006520	Root Summer glycyrrhizin high producing strain	13.654
DRR006521	Root Winter glycyrrhizin high producing strain	8.510
DRR006522	Root Winter glycyrrhizin high producing strain	8.355
DRR006523	Root Summer glycyrrhizin low producing strain	162.214
DRR006524	Root Summer glycyrrhizin low producing strain	160.498
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.782
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.946

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	329.674
SRR2868004	Drought Stress (root)	733.908
SRR2967015	Control (root)	552.547

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	40.295
SRR9715740	Leaf	30.211
SRR9715741	Leaf	62.264
SRR9715739	Root	15.329
SRR9715742	Root	24.084
SRR9715743	Root	23.951

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	398.909
SRR8749028	MeJA induced 9h	981.529
SRR8749029	MeJA induced 9h	1104.757
SRR8749030	Uninduced	628.906
SRR8749031	Uninduced	1236.118
SRR8749032	Uninduced	839.773

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	182.775
SRR8400027	Control - Root	142.817