Gene detail information of Glyur000563s00023583 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G44220.1 | 1.00E-62 | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
| NR | XP_004506216.1 | 2.16E-118 | PREDICTED: protein NDR1-like [Cicer arietinum] |
| Swissprot | tr|Q9SJ52|YLS9_ARATH | 1.00E-18 | Protein YLS9 |
| trEMBL | tr|G7JH86|G7JH86_MEDTR | 4.00E-111 | Late embryogenesis abundant protein {ECO:0000313|EMBL:AES88282.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00563 | 24351 | 25010 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000563s00023583.1 | PF03168.8 | LEA_2 | 81 | 185 | 5.00E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.534 |
| SRR1783600 | control | 5.718 |
| SRR1783602 | moderate drought stress | 4.653 |
| SRR1811619 | moderate drought stress | 4.596 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.568 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.401 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.316 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.326 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.941 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.638 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.096 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.034 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.718 |
| SRR2868004 | Drought Stress (root) | 3.403 |
| SRR2967015 | Control (root) | 3.557 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.407 |
| SRR9715740 | Leaf | 0.192 |
| SRR9715741 | Leaf | 1.619 |
| SRR9715739 | Root | 0.914 |
| SRR9715742 | Root | 1.641 |
| SRR9715743 | Root | 2.268 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.377 |
| SRR8749028 | MeJA induced 9h | 0.101 |
| SRR8749029 | MeJA induced 9h | 0.277 |
| SRR8749030 | Uninduced | 0.091 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.589 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.750 |
| SRR8400027 | Control - Root | 3.081 |